miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22884 5' -57.9 NC_005137.2 + 38655 0.66 0.822752
Target:  5'- --gCUGGGCAggcgCGCGUUGCGGCAc-- -3'
miRNA:   3'- ccaGGCCCGUa---GCGCGGUGCUGUaca -5'
22884 5' -57.9 NC_005137.2 + 100040 0.66 0.822752
Target:  5'- cGGUCCGacgcGGCG-CGCGgCGCGuucaGCAUGc -3'
miRNA:   3'- -CCAGGC----CCGUaGCGCgGUGC----UGUACa -5'
22884 5' -57.9 NC_005137.2 + 102950 0.67 0.786769
Target:  5'- cGUCUGGcgcaucccagcgcGCGUCGCGCCACGuuCGa-- -3'
miRNA:   3'- cCAGGCC-------------CGUAGCGCGGUGCu-GUaca -5'
22884 5' -57.9 NC_005137.2 + 7002 0.67 0.773001
Target:  5'- cGGUcgCCGGGCAcaacguggcgcacgCGCGUCACGGCc--- -3'
miRNA:   3'- -CCA--GGCCCGUa-------------GCGCGGUGCUGuaca -5'
22884 5' -57.9 NC_005137.2 + 25770 0.67 0.750407
Target:  5'- --aCUGGGCaAUUGUGUCGCGACAa-- -3'
miRNA:   3'- ccaGGCCCG-UAGCGCGGUGCUGUaca -5'
22884 5' -57.9 NC_005137.2 + 123713 0.67 0.750407
Target:  5'- --cCCGGGCAaaGCGaCCGCaACGUGUu -3'
miRNA:   3'- ccaGGCCCGUagCGC-GGUGcUGUACA- -5'
22884 5' -57.9 NC_005137.2 + 24728 0.69 0.641211
Target:  5'- uGGcgCCgugGGGCAUCGCguGCCugGACAa-- -3'
miRNA:   3'- -CCa-GG---CCCGUAGCG--CGGugCUGUaca -5'
22884 5' -57.9 NC_005137.2 + 100267 0.69 0.631076
Target:  5'- ---aCGGGCG-CGCGUCGCGGCAUu- -3'
miRNA:   3'- ccagGCCCGUaGCGCGGUGCUGUAca -5'
22884 5' -57.9 NC_005137.2 + 31302 0.7 0.560555
Target:  5'- uGUCguCGGGCGUCGCGCaCGUGACAuuUGUu -3'
miRNA:   3'- cCAG--GCCCGUAGCGCG-GUGCUGU--ACA- -5'
22884 5' -57.9 NC_005137.2 + 74445 0.71 0.550625
Target:  5'- cGUCgGGGCGUuugaaUGUGCC-CGGCAUGg -3'
miRNA:   3'- cCAGgCCCGUA-----GCGCGGuGCUGUACa -5'
22884 5' -57.9 NC_005137.2 + 14778 0.77 0.262827
Target:  5'- --aCCGGGCGUCGUGUuuccuCGCGACGUGa -3'
miRNA:   3'- ccaGGCCCGUAGCGCG-----GUGCUGUACa -5'
22884 5' -57.9 NC_005137.2 + 66912 1.08 0.001967
Target:  5'- uGGUCCGGGCAUCGCGCCACGACAUGUu -3'
miRNA:   3'- -CCAGGCCCGUAGCGCGGUGCUGUACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.