miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22886 3' -53.6 NC_005137.2 + 5250 0.68 0.861329
Target:  5'- cGCGc-CGCucGAaacGCGCGGCGCAAg -3'
miRNA:   3'- aCGCaaGCGuuCUaa-CGCGUCGCGUU- -5'
22886 3' -53.6 NC_005137.2 + 11765 0.68 0.844847
Target:  5'- aGCGUUUauaaagGCuGGAagUGCGCAGuCGCAAg -3'
miRNA:   3'- aCGCAAG------CGuUCUa-ACGCGUC-GCGUU- -5'
22886 3' -53.6 NC_005137.2 + 18580 0.7 0.761145
Target:  5'- cGcCGUuucaaUUGCGAGAUUGCccGCAGCGUGAc -3'
miRNA:   3'- aC-GCA-----AGCGUUCUAACG--CGUCGCGUU- -5'
22886 3' -53.6 NC_005137.2 + 22829 0.69 0.780895
Target:  5'- cGCGUUgccaaaCGCGAGGgcggGCGC-GCGCAu -3'
miRNA:   3'- aCGCAA------GCGUUCUaa--CGCGuCGCGUu -5'
22886 3' -53.6 NC_005137.2 + 25684 0.66 0.929156
Target:  5'- gGCGUUUGCAgacaagguGGAUUGggaCGCGGUGUc- -3'
miRNA:   3'- aCGCAAGCGU--------UCUAAC---GCGUCGCGuu -5'
22886 3' -53.6 NC_005137.2 + 32419 0.68 0.861329
Target:  5'- gGCGcUUUGCGAGG-UGCGCAacaGUGCGu -3'
miRNA:   3'- aCGC-AAGCGUUCUaACGCGU---CGCGUu -5'
22886 3' -53.6 NC_005137.2 + 33060 0.76 0.411058
Target:  5'- cGCGUUCuaGAGAUUGUGCAGCa--- -3'
miRNA:   3'- aCGCAAGcgUUCUAACGCGUCGcguu -5'
22886 3' -53.6 NC_005137.2 + 34958 0.68 0.853199
Target:  5'- aGCGUUCGUcgcuAAG-UUGgGCGGCGguGg -3'
miRNA:   3'- aCGCAAGCG----UUCuAACgCGUCGCguU- -5'
22886 3' -53.6 NC_005137.2 + 35814 0.68 0.82751
Target:  5'- cGCGUU-GCAAucuGcgUGCGUAGUGCAc -3'
miRNA:   3'- aCGCAAgCGUU---CuaACGCGUCGCGUu -5'
22886 3' -53.6 NC_005137.2 + 51740 0.71 0.677943
Target:  5'- aUGCGUUaCGcCAAGAUUGUGCuGuUGCAAg -3'
miRNA:   3'- -ACGCAA-GC-GUUCUAACGCGuC-GCGUU- -5'
22886 3' -53.6 NC_005137.2 + 58656 0.66 0.911503
Target:  5'- aGCGUgcaCGC-GGAgcgGCGCAgcucGCGCAAu -3'
miRNA:   3'- aCGCAa--GCGuUCUaa-CGCGU----CGCGUU- -5'
22886 3' -53.6 NC_005137.2 + 61076 0.69 0.771088
Target:  5'- cGCGUauUCGUuuguggccGAcGGUUGCGUGGCGCAu -3'
miRNA:   3'- aCGCA--AGCG--------UU-CUAACGCGUCGCGUu -5'
22886 3' -53.6 NC_005137.2 + 63692 1.06 0.004749
Target:  5'- uUGCGUUCGCAAGAUUGCGCAGCGCAAc -3'
miRNA:   3'- -ACGCAAGCGUUCUAACGCGUCGCGUU- -5'
22886 3' -53.6 NC_005137.2 + 67299 0.72 0.635004
Target:  5'- aGCGUUUGUcucuGUUGCGCuGCGCAAu -3'
miRNA:   3'- aCGCAAGCGuuc-UAACGCGuCGCGUU- -5'
22886 3' -53.6 NC_005137.2 + 72094 0.68 0.844847
Target:  5'- cGCGUUucuggcgaacCGCAAGAUUGUGagcguuGUGCAAa -3'
miRNA:   3'- aCGCAA----------GCGUUCUAACGCgu----CGCGUU- -5'
22886 3' -53.6 NC_005137.2 + 74753 0.66 0.917651
Target:  5'- -cCGUU-GCAAcAUUGCGCGGUGCGg -3'
miRNA:   3'- acGCAAgCGUUcUAACGCGUCGCGUu -5'
22886 3' -53.6 NC_005137.2 + 75584 0.66 0.923536
Target:  5'- gGCGgaCGCGGGcg-GCGCcguGCGCGu -3'
miRNA:   3'- aCGCaaGCGUUCuaaCGCGu--CGCGUu -5'
22886 3' -53.6 NC_005137.2 + 76635 0.69 0.818543
Target:  5'- cGCGcuagcUUCGCu---UUGCGCGGCGCu- -3'
miRNA:   3'- aCGC-----AAGCGuucuAACGCGUCGCGuu -5'
22886 3' -53.6 NC_005137.2 + 78153 0.67 0.884321
Target:  5'- -aCGUUUGCAaauAGAUUGCGuCAcGCGCu- -3'
miRNA:   3'- acGCAAGCGU---UCUAACGC-GU-CGCGuu -5'
22886 3' -53.6 NC_005137.2 + 83765 0.71 0.667246
Target:  5'- uUGCGUUUGUAcGAccGCaGCGGCGCAGu -3'
miRNA:   3'- -ACGCAAGCGUuCUaaCG-CGUCGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.