Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22887 | 3' | -52.8 | NC_005137.2 | + | 32984 | 0.66 | 0.974436 |
Target: 5'- -cUCGCAGCGccCGACGuGCaCGCUGg -3' miRNA: 3'- acAGCGUUGCcaGCUGCuUG-GUGACg -5' |
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22887 | 3' | -52.8 | NC_005137.2 | + | 100211 | 0.66 | 0.972801 |
Target: 5'- gUGUUGCugguGCGcGUCGACGAcgacaaaaacucuauGCUAUauuUGCg -3' miRNA: 3'- -ACAGCGu---UGC-CAGCUGCU---------------UGGUG---ACG- -5' |
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22887 | 3' | -52.8 | NC_005137.2 | + | 51282 | 0.66 | 0.97167 |
Target: 5'- cGUCGCAAUuugCGGCGGGCaGCgGCa -3' miRNA: 3'- aCAGCGUUGccaGCUGCUUGgUGaCG- -5' |
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22887 | 3' | -52.8 | NC_005137.2 | + | 8556 | 0.66 | 0.965503 |
Target: 5'- aUGUgCGCu-CGGcCGACGGaguagaccGCgCGCUGCa -3' miRNA: 3'- -ACA-GCGuuGCCaGCUGCU--------UG-GUGACG- -5' |
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22887 | 3' | -52.8 | NC_005137.2 | + | 34599 | 0.66 | 0.968694 |
Target: 5'- cGUCGCcgcgcggguAGCGGUCGGCGcggcuCCAUa-- -3' miRNA: 3'- aCAGCG---------UUGCCAGCUGCuu---GGUGacg -5' |
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22887 | 3' | -52.8 | NC_005137.2 | + | 21537 | 0.66 | 0.968694 |
Target: 5'- -aUCGUgauuaaaaaGugGGUCGACGAaacGCCGCguuggGUg -3' miRNA: 3'- acAGCG---------UugCCAGCUGCU---UGGUGa----CG- -5' |
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22887 | 3' | -52.8 | NC_005137.2 | + | 26557 | 0.66 | 0.968694 |
Target: 5'- aGUCGUGGCGcugCGGCGuguCgACUGCc -3' miRNA: 3'- aCAGCGUUGCca-GCUGCuu-GgUGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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