miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22887 3' -52.8 NC_005137.2 + 4236 0.67 0.950463
Target:  5'- -aUUGCGuCGGUCGGCGA--CACgUGCa -3'
miRNA:   3'- acAGCGUuGCCAGCUGCUugGUG-ACG- -5'
22887 3' -52.8 NC_005137.2 + 24286 0.67 0.946111
Target:  5'- uUGggCGCAaucaaACGG-CGGCGuuuGCgGCUGCg -3'
miRNA:   3'- -ACa-GCGU-----UGCCaGCUGCu--UGgUGACG- -5'
22887 3' -52.8 NC_005137.2 + 75963 0.67 0.944758
Target:  5'- uUGUCGUGACGcGgcgcgCGuuggugcacggcgcACGGGCCAUUGCc -3'
miRNA:   3'- -ACAGCGUUGC-Ca----GC--------------UGCUUGGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 105055 0.67 0.941515
Target:  5'- gGUCuGCAAUGGggcUGuCGAACCAUUcGCg -3'
miRNA:   3'- aCAG-CGUUGCCa--GCuGCUUGGUGA-CG- -5'
22887 3' -52.8 NC_005137.2 + 88818 0.67 0.941515
Target:  5'- cGUCGCGuccCuGUCGGCGGACgcgaCGCUGg -3'
miRNA:   3'- aCAGCGUu--GcCAGCUGCUUG----GUGACg -5'
22887 3' -52.8 NC_005137.2 + 63661 0.68 0.936671
Target:  5'- cGUCGCGcccGCGGUCacCGAACC-CgacGCg -3'
miRNA:   3'- aCAGCGU---UGCCAGcuGCUUGGuGa--CG- -5'
22887 3' -52.8 NC_005137.2 + 98384 0.68 0.9321
Target:  5'- cGUCGCGACGGgcuuuuuaucaacgGGCaGGACCuuuuucgaGCUGCa -3'
miRNA:   3'- aCAGCGUUGCCag------------CUG-CUUGG--------UGACG- -5'
22887 3' -52.8 NC_005137.2 + 18990 0.68 0.926239
Target:  5'- cGUCGCAGCGcGUC-ACGGuACguUUGCu -3'
miRNA:   3'- aCAGCGUUGC-CAGcUGCU-UGguGACG- -5'
22887 3' -52.8 NC_005137.2 + 130564 0.69 0.908722
Target:  5'- -uUCGgAGCGGUCgGACGuuGCCACcaGCg -3'
miRNA:   3'- acAGCgUUGCCAG-CUGCu-UGGUGa-CG- -5'
22887 3' -52.8 NC_005137.2 + 128699 0.69 0.902389
Target:  5'- aG-CGCGuuGCGGUCGAgGAACCcaaaacgaUGCa -3'
miRNA:   3'- aCaGCGU--UGCCAGCUgCUUGGug------ACG- -5'
22887 3' -52.8 NC_005137.2 + 44220 0.69 0.902389
Target:  5'- -uUCGUAuGCGGcUCGGCucgGAAuCCACUGCa -3'
miRNA:   3'- acAGCGU-UGCC-AGCUG---CUU-GGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 21589 0.69 0.902389
Target:  5'- cG-CGCAuaggccGCGGUuuUGACGAGCCcgacggugucagGCUGCa -3'
miRNA:   3'- aCaGCGU------UGCCA--GCUGCUUGG------------UGACG- -5'
22887 3' -52.8 NC_005137.2 + 25943 0.69 0.895812
Target:  5'- uUG-CGCAAUGGuUCGACagccCCAUUGCa -3'
miRNA:   3'- -ACaGCGUUGCC-AGCUGcuu-GGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 26654 0.69 0.881942
Target:  5'- cGUCGCAGCGcGaacaCGACGAcgcACgCACgUGCg -3'
miRNA:   3'- aCAGCGUUGC-Ca---GCUGCU---UG-GUG-ACG- -5'
22887 3' -52.8 NC_005137.2 + 14154 0.7 0.874658
Target:  5'- cGgaaGCAACGG-CGACGAGCaGCaGCa -3'
miRNA:   3'- aCag-CGUUGCCaGCUGCUUGgUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 115231 0.7 0.873173
Target:  5'- aGUUGCGuuuuggugggaGGUCGACGAACaCAUgGCg -3'
miRNA:   3'- aCAGCGUug---------CCAGCUGCUUG-GUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 78702 0.71 0.817685
Target:  5'- cGU-GCGACGGgUGGCaGAACgGCUGCg -3'
miRNA:   3'- aCAgCGUUGCCaGCUG-CUUGgUGACG- -5'
22887 3' -52.8 NC_005137.2 + 74639 0.71 0.817685
Target:  5'- -uUUGCGccaacaucGCGGUCGACGggUUACcGCg -3'
miRNA:   3'- acAGCGU--------UGCCAGCUGCuuGGUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 23845 0.72 0.781092
Target:  5'- cGUCGCucagcuuuuGACGGUCGGCGucacccaacccGCCGCcGCc -3'
miRNA:   3'- aCAGCG---------UUGCCAGCUGCu----------UGGUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 124219 0.72 0.761922
Target:  5'- uUGUCagGCAACGGacUUGACGAACcCAC-GCa -3'
miRNA:   3'- -ACAG--CGUUGCC--AGCUGCUUG-GUGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.