miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22887 5' -56.3 NC_005137.2 + 115181 0.66 0.881991
Target:  5'- -cGCGcCCGAUgCGUUUAaggcauGCCaCGUGCGc -3'
miRNA:   3'- gaCGC-GGCUGaGCAAGU------UGG-GCACGC- -5'
22887 5' -56.3 NC_005137.2 + 33255 0.67 0.852202
Target:  5'- -aGCGCCuGGCU-GUUCGagGCCCgGUGUGc -3'
miRNA:   3'- gaCGCGG-CUGAgCAAGU--UGGG-CACGC- -5'
22887 5' -56.3 NC_005137.2 + 129000 0.67 0.84424
Target:  5'- uCUGCGCCGcagCGUgcaCGAgCUGUGCa -3'
miRNA:   3'- -GACGCGGCugaGCAa--GUUgGGCACGc -5'
22887 5' -56.3 NC_005137.2 + 100006 0.67 0.834433
Target:  5'- -gGCGCCGACcagCGUgcgcgguugggaCGACCCG-GCa -3'
miRNA:   3'- gaCGCGGCUGa--GCAa-----------GUUGGGCaCGc -5'
22887 5' -56.3 NC_005137.2 + 60756 0.67 0.827747
Target:  5'- ---aGCCGGC-CGacaUUUGGCCCGUGCGc -3'
miRNA:   3'- gacgCGGCUGaGC---AAGUUGGGCACGC- -5'
22887 5' -56.3 NC_005137.2 + 65219 0.68 0.801692
Target:  5'- gCUG-GCCGAaccCUUGUUUGACCCGUuuGCa -3'
miRNA:   3'- -GACgCGGCU---GAGCAAGUUGGGCA--CGc -5'
22887 5' -56.3 NC_005137.2 + 96405 0.68 0.774258
Target:  5'- -cGCGCCGAC-CGcu--ACCCGcGCGg -3'
miRNA:   3'- gaCGCGGCUGaGCaaguUGGGCaCGC- -5'
22887 5' -56.3 NC_005137.2 + 104080 0.68 0.764847
Target:  5'- gUGCuugGCCGGCUCGUUgugacGCCaUGUGCGg -3'
miRNA:   3'- gACG---CGGCUGAGCAAgu---UGG-GCACGC- -5'
22887 5' -56.3 NC_005137.2 + 1514 0.69 0.745681
Target:  5'- -gGCGCCGACgcgUUGUUCAAUUCG-GCc -3'
miRNA:   3'- gaCGCGGCUG---AGCAAGUUGGGCaCGc -5'
22887 5' -56.3 NC_005137.2 + 32806 0.69 0.735944
Target:  5'- -aGCGUCGAauaCGU---GCCCGUGCGg -3'
miRNA:   3'- gaCGCGGCUga-GCAaguUGGGCACGC- -5'
22887 5' -56.3 NC_005137.2 + 41571 0.69 0.706228
Target:  5'- -gGCuCCGAUcgCGUUgAACCCGUGUGc -3'
miRNA:   3'- gaCGcGGCUGa-GCAAgUUGGGCACGC- -5'
22887 5' -56.3 NC_005137.2 + 7954 0.7 0.675948
Target:  5'- -cGCGCCGcgacCUCGaccggCGGCCCGUGUu -3'
miRNA:   3'- gaCGCGGCu---GAGCaa---GUUGGGCACGc -5'
22887 5' -56.3 NC_005137.2 + 71596 0.71 0.624875
Target:  5'- -cGCGCUGGCcgUGUUCAGCCUG-GUGu -3'
miRNA:   3'- gaCGCGGCUGa-GCAAGUUGGGCaCGC- -5'
22887 5' -56.3 NC_005137.2 + 8051 0.77 0.331344
Target:  5'- -gGUGCUGACggCGUuccugcUCGGCCCGUGCGu -3'
miRNA:   3'- gaCGCGGCUGa-GCA------AGUUGGGCACGC- -5'
22887 5' -56.3 NC_005137.2 + 110643 0.77 0.323918
Target:  5'- -cGCGCCGACggCGUUUGGCuuGUGCc -3'
miRNA:   3'- gaCGCGGCUGa-GCAAGUUGggCACGc -5'
22887 5' -56.3 NC_005137.2 + 62577 1.08 0.003001
Target:  5'- gCUGCGCCGACUCGUUCAACCCGUGCGc -3'
miRNA:   3'- -GACGCGGCUGAGCAAGUUGGGCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.