miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22888 3' -58.8 NC_005137.2 + 20965 0.66 0.769281
Target:  5'- cUGcCugCGGCGCGCguuuuGCCGCGcuugCACGc -3'
miRNA:   3'- cAC-GugGUUGCGCG-----CGGCGCa---GUGCu -5'
22888 3' -58.8 NC_005137.2 + 24678 0.66 0.769281
Target:  5'- uUGcCGCCAcCGC-CGUCGUgGUCACGAc -3'
miRNA:   3'- cAC-GUGGUuGCGcGCGGCG-CAGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 55422 0.66 0.769281
Target:  5'- -cGCGCaCGGCGcCGC-CCGCGUC-CGc -3'
miRNA:   3'- caCGUG-GUUGC-GCGcGGCGCAGuGCu -5'
22888 3' -58.8 NC_005137.2 + 63459 0.66 0.778543
Target:  5'- -cGC-UCGGCGCGCguuuguGCCGCcUCGCGGc -3'
miRNA:   3'- caCGuGGUUGCGCG------CGGCGcAGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 56864 0.66 0.778543
Target:  5'- uGUGCACaauuuuaaaugCAAC-CGUGCCGUGccggCGCGAa -3'
miRNA:   3'- -CACGUG-----------GUUGcGCGCGGCGCa---GUGCU- -5'
22888 3' -58.8 NC_005137.2 + 49401 0.66 0.778543
Target:  5'- uGUGCACgAcccugcuuAC-UGCuGCCGCGUCACGc -3'
miRNA:   3'- -CACGUGgU--------UGcGCG-CGGCGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 58628 0.66 0.777622
Target:  5'- uUGCGCCGccgaauuGCGCGUGUacacuaGCGUgCACGc -3'
miRNA:   3'- cACGUGGU-------UGCGCGCGg-----CGCA-GUGCu -5'
22888 3' -58.8 NC_005137.2 + 31028 0.66 0.773001
Target:  5'- cGUGCGCUgcuggcgcacgaagaGGCGCGCGgCCGCGgC-CGu -3'
miRNA:   3'- -CACGUGG---------------UUGCGCGC-GGCGCaGuGCu -5'
22888 3' -58.8 NC_005137.2 + 91158 0.67 0.711506
Target:  5'- -aGCGCaaacCGCGUGCuCGUGuUCACGAu -3'
miRNA:   3'- caCGUGguu-GCGCGCG-GCGC-AGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 110633 0.67 0.721353
Target:  5'- cGUGCACaAACGCGcCGaCgGCGUUugGc -3'
miRNA:   3'- -CACGUGgUUGCGC-GC-GgCGCAGugCu -5'
22888 3' -58.8 NC_005137.2 + 64529 0.67 0.725271
Target:  5'- uGUGCgcaccggcaacguugACCAACGUGCGCacguuaaGCGaCACGu -3'
miRNA:   3'- -CACG---------------UGGUUGCGCGCGg------CGCaGUGCu -5'
22888 3' -58.8 NC_005137.2 + 116874 0.67 0.731124
Target:  5'- uGUGCGC--AUGUGCGCUGCccCGCGAc -3'
miRNA:   3'- -CACGUGguUGCGCGCGGCGcaGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 104695 0.67 0.691622
Target:  5'- cGUGUuagaguCCAGCGCGcCGCCGuUGUaCGCGu -3'
miRNA:   3'- -CACGu-----GGUUGCGC-GCGGC-GCA-GUGCu -5'
22888 3' -58.8 NC_005137.2 + 123344 0.67 0.691622
Target:  5'- cUGCGCCAAC-CGCGCC-CG--ACGAa -3'
miRNA:   3'- cACGUGGUUGcGCGCGGcGCagUGCU- -5'
22888 3' -58.8 NC_005137.2 + 115755 0.67 0.681603
Target:  5'- -cGCaACguGCGCGCGCgGCGUUuucccugcuugACGAc -3'
miRNA:   3'- caCG-UGguUGCGCGCGgCGCAG-----------UGCU- -5'
22888 3' -58.8 NC_005137.2 + 67674 0.67 0.681603
Target:  5'- cGUGCGuuCCAGCGCGCG-UGUGUUGCc- -3'
miRNA:   3'- -CACGU--GGUUGCGCGCgGCGCAGUGcu -5'
22888 3' -58.8 NC_005137.2 + 45665 0.67 0.681603
Target:  5'- cGUGUacACCAACGUGgGCgGCGgcgccaaCGCGGa -3'
miRNA:   3'- -CACG--UGGUUGCGCgCGgCGCa------GUGCU- -5'
22888 3' -58.8 NC_005137.2 + 72309 0.67 0.681603
Target:  5'- uUGaCGCCAACGCgGCGCCacuguccgaacGCGaauugCGCGAg -3'
miRNA:   3'- cAC-GUGGUUGCG-CGCGG-----------CGCa----GUGCU- -5'
22888 3' -58.8 NC_005137.2 + 95601 0.67 0.721353
Target:  5'- aUG-AUgGGCGCGCGCCgauuccaaauGCGUCGCGu -3'
miRNA:   3'- cACgUGgUUGCGCGCGG----------CGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 26548 0.67 0.731124
Target:  5'- cGUGCAacaagUCGugGCGCuGCgGCGUguCGAc -3'
miRNA:   3'- -CACGU-----GGUugCGCG-CGgCGCAguGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.