miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22888 3' -58.8 NC_005137.2 + 124966 0.68 0.641211
Target:  5'- -gGCGCCGgugaugggGCGCuGCGCUGCGUUggaaaucggGCGGg -3'
miRNA:   3'- caCGUGGU--------UGCG-CGCGGCGCAG---------UGCU- -5'
22888 3' -58.8 NC_005137.2 + 4502 0.68 0.631076
Target:  5'- -gGCAcCCAACGCGCGuuGCcuauUCACc- -3'
miRNA:   3'- caCGU-GGUUGCGCGCggCGc---AGUGcu -5'
22888 3' -58.8 NC_005137.2 + 61115 0.68 0.624994
Target:  5'- -cGCACCAACGcCGCGUucguguuggugcaaaCGuCGUCGCa- -3'
miRNA:   3'- caCGUGGUUGC-GCGCG---------------GC-GCAGUGcu -5'
22888 3' -58.8 NC_005137.2 + 67552 0.68 0.620941
Target:  5'- -gGCACaAACGCGCGCCGa---GCGGg -3'
miRNA:   3'- caCGUGgUUGCGCGCGGCgcagUGCU- -5'
22888 3' -58.8 NC_005137.2 + 10719 0.69 0.610815
Target:  5'- cGUGCACCGcauCGCGCaCGCGUCGg-- -3'
miRNA:   3'- -CACGUGGUugcGCGCG-GCGCAGUgcu -5'
22888 3' -58.8 NC_005137.2 + 63640 0.69 0.600704
Target:  5'- -cGCGgCGACGguCGCGCauCGCGUCGCGc -3'
miRNA:   3'- caCGUgGUUGC--GCGCG--GCGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 34678 0.69 0.580557
Target:  5'- -cGCACCAGCaaGCGCCGUggggucccguGUC-CGAu -3'
miRNA:   3'- caCGUGGUUGcgCGCGGCG----------CAGuGCU- -5'
22888 3' -58.8 NC_005137.2 + 7011 0.7 0.540749
Target:  5'- -gGCACaaCGugGCGCaCgCGCGUCACGGc -3'
miRNA:   3'- caCGUG--GUugCGCGcG-GCGCAGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 79584 0.7 0.530933
Target:  5'- -cGCGCCGcCGUGCGauaGCGUCGCa- -3'
miRNA:   3'- caCGUGGUuGCGCGCgg-CGCAGUGcu -5'
22888 3' -58.8 NC_005137.2 + 43850 0.7 0.530933
Target:  5'- uUGCACguGCGaaaCGCCGCGgaUCGCGAg -3'
miRNA:   3'- cACGUGguUGCgc-GCGGCGC--AGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 110038 0.66 0.763666
Target:  5'- -aGCGCggcaaAACGCGCGCCGCaggcagcagacgccaGUCgucGCGGu -3'
miRNA:   3'- caCGUGg----UUGCGCGCGGCG---------------CAG---UGCU- -5'
22888 3' -58.8 NC_005137.2 + 130989 0.66 0.759899
Target:  5'- uUGCGCCuGACGCGcCGCUGU-UCACu- -3'
miRNA:   3'- cACGUGG-UUGCGC-GCGGCGcAGUGcu -5'
22888 3' -58.8 NC_005137.2 + 91717 0.66 0.750407
Target:  5'- -cGCACUuuuuGCGCGCGaCGUGUacgccaGCGAu -3'
miRNA:   3'- caCGUGGu---UGCGCGCgGCGCAg-----UGCU- -5'
22888 3' -58.8 NC_005137.2 + 59101 0.66 0.750407
Target:  5'- uUGCACCGaaucgcugcucuGCGCGagGCUGgGUgACGAu -3'
miRNA:   3'- cACGUGGU------------UGCGCg-CGGCgCAgUGCU- -5'
22888 3' -58.8 NC_005137.2 + 34489 0.66 0.769281
Target:  5'- -cGCGUCAAuuUGCGCGCCGCuaGUCAUa- -3'
miRNA:   3'- caCGUGGUU--GCGCGCGGCG--CAGUGcu -5'
22888 3' -58.8 NC_005137.2 + 31028 0.66 0.773001
Target:  5'- cGUGCGCUgcuggcgcacgaagaGGCGCGCGgCCGCGgC-CGu -3'
miRNA:   3'- -CACGUGG---------------UUGCGCGC-GGCGCaGuGCu -5'
22888 3' -58.8 NC_005137.2 + 58628 0.66 0.777622
Target:  5'- uUGCGCCGccgaauuGCGCGUGUacacuaGCGUgCACGc -3'
miRNA:   3'- cACGUGGU-------UGCGCGCGg-----CGCA-GUGCu -5'
22888 3' -58.8 NC_005137.2 + 49401 0.66 0.778543
Target:  5'- uGUGCACgAcccugcuuAC-UGCuGCCGCGUCACGc -3'
miRNA:   3'- -CACGUGgU--------UGcGCG-CGGCGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 56864 0.66 0.778543
Target:  5'- uGUGCACaauuuuaaaugCAAC-CGUGCCGUGccggCGCGAa -3'
miRNA:   3'- -CACGUG-----------GUUGcGCGCGGCGCa---GUGCU- -5'
22888 3' -58.8 NC_005137.2 + 55038 1.08 0.001536
Target:  5'- cGUGCACCAACGCGCGCCGCGUCACGAc -3'
miRNA:   3'- -CACGUGGUUGCGCGCGGCGCAGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.