miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22888 3' -58.8 NC_005137.2 + 33567 0.67 0.711506
Target:  5'- uGUGCcCCGACauguuuuugaGUGCGCCGCGcC-CGGu -3'
miRNA:   3'- -CACGuGGUUG----------CGCGCGGCGCaGuGCU- -5'
22888 3' -58.8 NC_005137.2 + 99401 0.67 0.711506
Target:  5'- -cGCcauaaaauCCAGCGUGCGuuGCaucauuGUCGCGAu -3'
miRNA:   3'- caCGu-------GGUUGCGCGCggCG------CAGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 18548 0.66 0.750407
Target:  5'- -gGCGCCGuCGCccauccugcCGCCGCGUCcaACGGc -3'
miRNA:   3'- caCGUGGUuGCGc--------GCGGCGCAG--UGCU- -5'
22888 3' -58.8 NC_005137.2 + 58628 0.66 0.777622
Target:  5'- uUGCGCCGccgaauuGCGCGUGUacacuaGCGUgCACGc -3'
miRNA:   3'- cACGUGGU-------UGCGCGCGg-----CGCA-GUGCu -5'
22888 3' -58.8 NC_005137.2 + 58208 0.68 0.620941
Target:  5'- -aGaCGgCAGCGCGCGCCGCcaaCGCGu -3'
miRNA:   3'- caC-GUgGUUGCGCGCGGCGca-GUGCu -5'
22888 3' -58.8 NC_005137.2 + 67180 0.67 0.701593
Target:  5'- uGUGCACCAACGUGUccaggGCCcguuCGUcCAUGGg -3'
miRNA:   3'- -CACGUGGUUGCGCG-----CGGc---GCA-GUGCU- -5'
22888 3' -58.8 NC_005137.2 + 95601 0.67 0.721353
Target:  5'- aUG-AUgGGCGCGCGCCgauuccaaauGCGUCGCGu -3'
miRNA:   3'- cACgUGgUUGCGCGCGG----------CGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 49401 0.66 0.778543
Target:  5'- uGUGCACgAcccugcuuAC-UGCuGCCGCGUCACGc -3'
miRNA:   3'- -CACGUGgU--------UGcGCG-CGGCGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 11317 0.67 0.701593
Target:  5'- cGUGCuaaGCUguguGCGCGCGCCGUGcCuguuuCGAg -3'
miRNA:   3'- -CACG---UGGu---UGCGCGCGGCGCaGu----GCU- -5'
22888 3' -58.8 NC_005137.2 + 56864 0.66 0.778543
Target:  5'- uGUGCACaauuuuaaaugCAAC-CGUGCCGUGccggCGCGAa -3'
miRNA:   3'- -CACGUG-----------GUUGcGCGCGGCGCa---GUGCU- -5'
22888 3' -58.8 NC_005137.2 + 97236 0.67 0.721353
Target:  5'- -aGCA-CAACGC-CGCCGCG-CACa- -3'
miRNA:   3'- caCGUgGUUGCGcGCGGCGCaGUGcu -5'
22888 3' -58.8 NC_005137.2 + 11437 0.67 0.711506
Target:  5'- cGUGC-UCAGCGUGCGUCGC-UCuacCGAg -3'
miRNA:   3'- -CACGuGGUUGCGCGCGGCGcAGu--GCU- -5'
22888 3' -58.8 NC_005137.2 + 22895 0.66 0.740812
Target:  5'- gGUGCugCGAUcgGCGCGCaaCGCGUacCACa- -3'
miRNA:   3'- -CACGugGUUG--CGCGCG--GCGCA--GUGcu -5'
22888 3' -58.8 NC_005137.2 + 128522 0.66 0.750407
Target:  5'- -aGCACCAugccgcACGCgGCGCauaaauaGCG-CGCGAu -3'
miRNA:   3'- caCGUGGU------UGCG-CGCGg------CGCaGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 130989 0.66 0.759899
Target:  5'- uUGCGCCuGACGCGcCGCUGU-UCACu- -3'
miRNA:   3'- cACGUGG-UUGCGC-GCGGCGcAGUGcu -5'
22888 3' -58.8 NC_005137.2 + 31028 0.66 0.773001
Target:  5'- cGUGCGCUgcuggcgcacgaagaGGCGCGCGgCCGCGgC-CGu -3'
miRNA:   3'- -CACGUGG---------------UUGCGCGC-GGCGCaGuGCu -5'
22888 3' -58.8 NC_005137.2 + 98821 0.71 0.492373
Target:  5'- cGUGCGCCGAC-CGCGUuuuuuuCGCGUUGCa- -3'
miRNA:   3'- -CACGUGGUUGcGCGCG------GCGCAGUGcu -5'
22888 3' -58.8 NC_005137.2 + 27189 0.69 0.610815
Target:  5'- cGUGCACCAACcCGcCGCCGCa-CACc- -3'
miRNA:   3'- -CACGUGGUUGcGC-GCGGCGcaGUGcu -5'
22888 3' -58.8 NC_005137.2 + 123553 0.68 0.650328
Target:  5'- uUGCACCAcaaACaGCGUGCCucGCGauugcaaUCGCGAa -3'
miRNA:   3'- cACGUGGU---UG-CGCGCGG--CGC-------AGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 15736 0.67 0.691622
Target:  5'- cUGCucGCCAAgguCGCgGCGCCaGCGUCGCc- -3'
miRNA:   3'- cACG--UGGUU---GCG-CGCGG-CGCAGUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.