miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22888 3' -58.8 NC_005137.2 + 98495 0.66 0.750407
Target:  5'- uUGCACCGACGCagaacCGagGCG-CACGAa -3'
miRNA:   3'- cACGUGGUUGCGc----GCggCGCaGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 51702 0.66 0.750407
Target:  5'- -gGCACCGuuGCGCGCGUCggaaGCG-CAUGu -3'
miRNA:   3'- caCGUGGU--UGCGCGCGG----CGCaGUGCu -5'
22888 3' -58.8 NC_005137.2 + 56668 0.66 0.748496
Target:  5'- cGUGCuuGCCGACG-GCGCUGUGgacgugaccggaCGCGAa -3'
miRNA:   3'- -CACG--UGGUUGCgCGCGGCGCa-----------GUGCU- -5'
22888 3' -58.8 NC_005137.2 + 68647 0.66 0.740812
Target:  5'- uUGUACgacaucaaCAACGUGCGCacgCGCGUgGCGGa -3'
miRNA:   3'- cACGUG--------GUUGCGCGCG---GCGCAgUGCU- -5'
22888 3' -58.8 NC_005137.2 + 7942 0.66 0.740812
Target:  5'- --uCACCAAggcUGCGCGCCGCGaccuCGAc -3'
miRNA:   3'- cacGUGGUU---GCGCGCGGCGCagu-GCU- -5'
22888 3' -58.8 NC_005137.2 + 22895 0.66 0.740812
Target:  5'- gGUGCugCGAUcgGCGCGCaaCGCGUacCACa- -3'
miRNA:   3'- -CACGugGUUG--CGCGCG--GCGCA--GUGcu -5'
22888 3' -58.8 NC_005137.2 + 104342 0.66 0.740812
Target:  5'- -cGCACguGCGUGCGUCGuCGuguUCGCGc -3'
miRNA:   3'- caCGUGguUGCGCGCGGC-GC---AGUGCu -5'
22888 3' -58.8 NC_005137.2 + 72798 0.66 0.740812
Target:  5'- -cGCGuuggCGGCGCGCGCUGcCGUCuuGAu -3'
miRNA:   3'- caCGUg---GUUGCGCGCGGC-GCAGugCU- -5'
22888 3' -58.8 NC_005137.2 + 116874 0.67 0.731124
Target:  5'- uGUGCGC--AUGUGCGCUGCccCGCGAc -3'
miRNA:   3'- -CACGUGguUGCGCGCGGCGcaGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 26548 0.67 0.731124
Target:  5'- cGUGCAacaagUCGugGCGCuGCgGCGUguCGAc -3'
miRNA:   3'- -CACGU-----GGUugCGCG-CGgCGCAguGCU- -5'
22888 3' -58.8 NC_005137.2 + 64529 0.67 0.725271
Target:  5'- uGUGCgcaccggcaacguugACCAACGUGCGCacguuaaGCGaCACGu -3'
miRNA:   3'- -CACG---------------UGGUUGCGCGCGg------CGCaGUGCu -5'
22888 3' -58.8 NC_005137.2 + 97236 0.67 0.721353
Target:  5'- -aGCA-CAACGC-CGCCGCG-CACa- -3'
miRNA:   3'- caCGUgGUUGCGcGCGGCGCaGUGcu -5'
22888 3' -58.8 NC_005137.2 + 95601 0.67 0.721353
Target:  5'- aUG-AUgGGCGCGCGCCgauuccaaauGCGUCGCGu -3'
miRNA:   3'- cACgUGgUUGCGCGCGG----------CGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 110633 0.67 0.721353
Target:  5'- cGUGCACaAACGCGcCGaCgGCGUUugGc -3'
miRNA:   3'- -CACGUGgUUGCGC-GC-GgCGCAGugCu -5'
22888 3' -58.8 NC_005137.2 + 91158 0.67 0.711506
Target:  5'- -aGCGCaaacCGCGUGCuCGUGuUCACGAu -3'
miRNA:   3'- caCGUGguu-GCGCGCG-GCGC-AGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 11437 0.67 0.711506
Target:  5'- cGUGC-UCAGCGUGCGUCGC-UCuacCGAg -3'
miRNA:   3'- -CACGuGGUUGCGCGCGGCGcAGu--GCU- -5'
22888 3' -58.8 NC_005137.2 + 99401 0.67 0.711506
Target:  5'- -cGCcauaaaauCCAGCGUGCGuuGCaucauuGUCGCGAu -3'
miRNA:   3'- caCGu-------GGUUGCGCGCggCG------CAGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 61990 0.67 0.711506
Target:  5'- -aGC-CgGAUGCGCGCCagaaugGCGUCGCu- -3'
miRNA:   3'- caCGuGgUUGCGCGCGG------CGCAGUGcu -5'
22888 3' -58.8 NC_005137.2 + 84567 0.67 0.711506
Target:  5'- aUGUGCCAcagcAUGUGCGCCaGCGgCAUGGu -3'
miRNA:   3'- cACGUGGU----UGCGCGCGG-CGCaGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 33567 0.67 0.711506
Target:  5'- uGUGCcCCGACauguuuuugaGUGCGCCGCGcC-CGGu -3'
miRNA:   3'- -CACGuGGUUG----------CGCGCGGCGCaGuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.