miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22888 5' -45.2 NC_005137.2 + 78456 0.66 0.999989
Target:  5'- -nUGGUGGCuGAGGCGGUGGc------ -3'
miRNA:   3'- caACUACUG-CUUUGCCGCCuuuuugu -5'
22888 5' -45.2 NC_005137.2 + 1345 0.66 0.999989
Target:  5'- --aGGUGGCG--GCGGCGGc--AACGu -3'
miRNA:   3'- caaCUACUGCuuUGCCGCCuuuUUGU- -5'
22888 5' -45.2 NC_005137.2 + 36759 0.66 0.999989
Target:  5'- uUUGGUGACucu-UGGCGGGAuacuGCAc -3'
miRNA:   3'- cAACUACUGcuuuGCCGCCUUuu--UGU- -5'
22888 5' -45.2 NC_005137.2 + 111459 0.66 0.999971
Target:  5'- -----aGACGGguuGGCGGCGGGcacAGAACGc -3'
miRNA:   3'- caacuaCUGCU---UUGCCGCCU---UUUUGU- -5'
22888 5' -45.2 NC_005137.2 + 82762 0.67 0.999943
Target:  5'- --gGAUGugGGcgacgguAACGGCGGcagcaacGGAAACGg -3'
miRNA:   3'- caaCUACugCU-------UUGCCGCC-------UUUUUGU- -5'
22888 5' -45.2 NC_005137.2 + 18856 0.67 0.999928
Target:  5'- cGUUGuggGGCGAAACGGUGaacacgcuGAAGCGc -3'
miRNA:   3'- -CAACua-CUGCUUUGCCGCcu------UUUUGU- -5'
22888 5' -45.2 NC_005137.2 + 71289 0.68 0.999835
Target:  5'- cUUGcugGACGAAGCGgGCGuGGAGAugGa -3'
miRNA:   3'- cAACua-CUGCUUUGC-CGC-CUUUUugU- -5'
22888 5' -45.2 NC_005137.2 + 80250 0.68 0.999786
Target:  5'- uUUGAUGACGgcGCgaacgccguGGCGGAGguuccGAGCu -3'
miRNA:   3'- cAACUACUGCuuUG---------CCGCCUU-----UUUGu -5'
22888 5' -45.2 NC_005137.2 + 44722 0.68 0.999724
Target:  5'- -----gGACGGAugGGUGGcAAGAAUAa -3'
miRNA:   3'- caacuaCUGCUUugCCGCC-UUUUUGU- -5'
22888 5' -45.2 NC_005137.2 + 120075 0.69 0.999553
Target:  5'- -gUGAUGGUGAAcucgcCGGCGGAGGAAa- -3'
miRNA:   3'- caACUACUGCUUu----GCCGCCUUUUUgu -5'
22888 5' -45.2 NC_005137.2 + 27334 0.69 0.998921
Target:  5'- ---aGUGGCGAAGgugauCGGCGuGAAAAACGa -3'
miRNA:   3'- caacUACUGCUUU-----GCCGC-CUUUUUGU- -5'
22888 5' -45.2 NC_005137.2 + 117973 0.7 0.998387
Target:  5'- -----cGACGAAaccaccgucACGGCGGAGAAuuACAu -3'
miRNA:   3'- caacuaCUGCUU---------UGCCGCCUUUU--UGU- -5'
22888 5' -45.2 NC_005137.2 + 78429 0.7 0.997645
Target:  5'- -aUGGUGGCuGAGGCGGUGGcuguuGAGAUg -3'
miRNA:   3'- caACUACUG-CUUUGCCGCCu----UUUUGu -5'
22888 5' -45.2 NC_005137.2 + 61386 0.72 0.992503
Target:  5'- aGUUGAUGGCGu--UGGCGGccgacguaAGAAACGc -3'
miRNA:   3'- -CAACUACUGCuuuGCCGCC--------UUUUUGU- -5'
22888 5' -45.2 NC_005137.2 + 78381 0.72 0.992503
Target:  5'- -gUGGUGGCuGAGGCGGCGGuuguuGAggUg -3'
miRNA:   3'- caACUACUG-CUUUGCCGCCu----UUuuGu -5'
22888 5' -45.2 NC_005137.2 + 14032 0.73 0.988524
Target:  5'- cGUUGGUGG-GAuGCGGCGGuAAAAUAu -3'
miRNA:   3'- -CAACUACUgCUuUGCCGCCuUUUUGU- -5'
22888 5' -45.2 NC_005137.2 + 758 0.73 0.980879
Target:  5'- --cGGUGGCGGcggcacguuuGGCGGCGGAGGcgguGGCAu -3'
miRNA:   3'- caaCUACUGCU----------UUGCCGCCUUU----UUGU- -5'
22888 5' -45.2 NC_005137.2 + 78508 0.74 0.973022
Target:  5'- --nGGUGGCuGAGGCGGCGGuuguuGAAGCc -3'
miRNA:   3'- caaCUACUG-CUUUGCCGCCu----UUUUGu -5'
22888 5' -45.2 NC_005137.2 + 26694 0.78 0.868661
Target:  5'- uUUGAUGGCGcuGAACGGCGGcgaAGAAGCc -3'
miRNA:   3'- cAACUACUGC--UUUGCCGCC---UUUUUGu -5'
22888 5' -45.2 NC_005137.2 + 78483 0.82 0.724123
Target:  5'- -aUGGUGGCuGAGGCGGCGGuuGAAACGg -3'
miRNA:   3'- caACUACUG-CUUUGCCGCCu-UUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.