miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22889 3' -56.6 NC_005137.2 + 52274 1.09 0.002102
Target:  5'- cGGGCAGACCGCGCACUUAUCGCCGAAg -3'
miRNA:   3'- -CCCGUCUGGCGCGUGAAUAGCGGCUU- -5'
22889 3' -56.6 NC_005137.2 + 13705 0.76 0.304507
Target:  5'- uGGGCGcGACCGCGUugUUGcuauuuuUUGCCGAc -3'
miRNA:   3'- -CCCGU-CUGGCGCGugAAU-------AGCGGCUu -5'
22889 3' -56.6 NC_005137.2 + 102925 0.72 0.482034
Target:  5'- cGGCAGGCCGCGCuGCgUGUacaGCCGu- -3'
miRNA:   3'- cCCGUCUGGCGCG-UGaAUAg--CGGCuu -5'
22889 3' -56.6 NC_005137.2 + 22845 0.72 0.52111
Target:  5'- aGGGCGGGCgCGCGCAUaccgaCGCCGc- -3'
miRNA:   3'- -CCCGUCUG-GCGCGUGaaua-GCGGCuu -5'
22889 3' -56.6 NC_005137.2 + 88491 0.71 0.58181
Target:  5'- cGGGCGGGCgagcgauuaGCGCGCUaUAcCGCCGGu -3'
miRNA:   3'- -CCCGUCUGg--------CGCGUGA-AUaGCGGCUu -5'
22889 3' -56.6 NC_005137.2 + 67918 0.7 0.612746
Target:  5'- cGGGCAGAUUGUuaaaCACUacGUCGCCGGGu -3'
miRNA:   3'- -CCCGUCUGGCGc---GUGAa-UAGCGGCUU- -5'
22889 3' -56.6 NC_005137.2 + 18353 0.69 0.654164
Target:  5'- cGGCAGugCGCGaAUUUGUCGaaGAAa -3'
miRNA:   3'- cCCGUCugGCGCgUGAAUAGCggCUU- -5'
22889 3' -56.6 NC_005137.2 + 93465 0.69 0.674798
Target:  5'- cGGGCacGGugCGCGCcaGCgccguUUGCCGAAa -3'
miRNA:   3'- -CCCG--UCugGCGCG--UGaau--AGCGGCUU- -5'
22889 3' -56.6 NC_005137.2 + 114797 0.69 0.674798
Target:  5'- uGGGCGGcUUGCGCACgucGUCGUCGu- -3'
miRNA:   3'- -CCCGUCuGGCGCGUGaa-UAGCGGCuu -5'
22889 3' -56.6 NC_005137.2 + 129319 0.69 0.67891
Target:  5'- cGGGacuaAGAUUGCGCGCguugcugaccgCGCCGAAa -3'
miRNA:   3'- -CCCg---UCUGGCGCGUGaaua-------GCGGCUU- -5'
22889 3' -56.6 NC_005137.2 + 98019 0.68 0.715563
Target:  5'- -uGCAaacauGugCGCGCACUUGgucagCGCCGGGu -3'
miRNA:   3'- ccCGU-----CugGCGCGUGAAUa----GCGGCUU- -5'
22889 3' -56.6 NC_005137.2 + 45735 0.67 0.774329
Target:  5'- cGGGCAG-CCGCGCcaagGgUUA-CGCCGc- -3'
miRNA:   3'- -CCCGUCuGGCGCG----UgAAUaGCGGCuu -5'
22889 3' -56.6 NC_005137.2 + 8572 0.67 0.783724
Target:  5'- cGGaGUAGACCGCGCGCUgca-GCa--- -3'
miRNA:   3'- -CC-CGUCUGGCGCGUGAauagCGgcuu -5'
22889 3' -56.6 NC_005137.2 + 39894 0.67 0.802084
Target:  5'- cGGCAaACUGCGUAauaguCUUGUCGCCa-- -3'
miRNA:   3'- cCCGUcUGGCGCGU-----GAAUAGCGGcuu -5'
22889 3' -56.6 NC_005137.2 + 30981 0.67 0.811032
Target:  5'- -cGuCGGACCGCGUGCUUGcgcacCGCUGGAg -3'
miRNA:   3'- ccC-GUCUGGCGCGUGAAUa----GCGGCUU- -5'
22889 3' -56.6 NC_005137.2 + 37489 0.67 0.811032
Target:  5'- cGGCcGACgCGUGCAUUUG-CGCCGu- -3'
miRNA:   3'- cCCGuCUG-GCGCGUGAAUaGCGGCuu -5'
22889 3' -56.6 NC_005137.2 + 67733 0.67 0.811032
Target:  5'- cGGCgAGACCGUGUuggagUUUggCGCCGAAa -3'
miRNA:   3'- cCCG-UCUGGCGCGu----GAAuaGCGGCUU- -5'
22889 3' -56.6 NC_005137.2 + 110623 0.66 0.819815
Target:  5'- uGGUgacGGCCGUGCACaaacgCGCCGAc -3'
miRNA:   3'- cCCGu--CUGGCGCGUGaaua-GCGGCUu -5'
22889 3' -56.6 NC_005137.2 + 37414 0.66 0.836846
Target:  5'- gGGGUAGcGCCGCGCguuuggaucaGCgugAUUGCCGc- -3'
miRNA:   3'- -CCCGUC-UGGCGCG----------UGaa-UAGCGGCuu -5'
22889 3' -56.6 NC_005137.2 + 110723 0.66 0.836846
Target:  5'- -cGguGugCGCGCagagcGCUUGUgCGCCGGg -3'
miRNA:   3'- ccCguCugGCGCG-----UGAAUA-GCGGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.