Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22890 | 3' | -55.7 | NC_005137.2 | + | 96312 | 0.67 | 0.825205 |
Target: 5'- -cACGCcGgCGCGCAaguguggacuGCCGaaacguUUCACCCa -3' miRNA: 3'- uuUGCGuUgGCGCGU----------CGGC------AAGUGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 32470 | 0.67 | 0.825205 |
Target: 5'- aAAACGCAGCauCGCGcCAGCaauuuGUUaACCCa -3' miRNA: 3'- -UUUGCGUUG--GCGC-GUCGg----CAAgUGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 60971 | 0.67 | 0.850254 |
Target: 5'- gGGGCGCAccacguaCGCGguGCCGUgggaUugCCg -3' miRNA: 3'- -UUUGCGUug-----GCGCguCGGCAa---GugGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 83779 | 0.67 | 0.850254 |
Target: 5'- --cCGCAGCgGCGCAGUC-UUCAgCg -3' miRNA: 3'- uuuGCGUUGgCGCGUCGGcAAGUgGg -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 34579 | 0.67 | 0.833748 |
Target: 5'- cAAACGCAACgCG-GCGGgCGcgUCGCCg -3' miRNA: 3'- -UUUGCGUUG-GCgCGUCgGCa-AGUGGg -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 96042 | 0.67 | 0.815599 |
Target: 5'- gGAACGCGACaguGCGCAG-CGUUucuugaaCACUCg -3' miRNA: 3'- -UUUGCGUUGg--CGCGUCgGCAA-------GUGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 35519 | 0.67 | 0.850254 |
Target: 5'- cGAUGCGcCCGUGCGGC-GcgCAUCCg -3' miRNA: 3'- uUUGCGUuGGCGCGUCGgCaaGUGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 85270 | 0.67 | 0.8421 |
Target: 5'- cGGCGUAACCcuugGCGCGGCU----GCCCg -3' miRNA: 3'- uUUGCGUUGG----CGCGUCGGcaagUGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 99939 | 0.67 | 0.819992 |
Target: 5'- cGACGCGcacgcauguuggacaACgGcCGCGGCCGcgCGCCUc -3' miRNA: 3'- uUUGCGU---------------UGgC-GCGUCGGCaaGUGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 7188 | 0.67 | 0.816481 |
Target: 5'- cAGCGCAuuucgaACCgGCGCGuGCCGUcuuccaauaacUCAUCCc -3' miRNA: 3'- uUUGCGU------UGG-CGCGU-CGGCA-----------AGUGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 31677 | 0.67 | 0.816481 |
Target: 5'- cGGACGaCAccGCCGCGUGGuuGUgcggUCGCaCCg -3' miRNA: 3'- -UUUGC-GU--UGGCGCGUCggCA----AGUG-GG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 106679 | 0.67 | 0.816481 |
Target: 5'- --uUGCAACCGacaaCGGCCGU--GCCCg -3' miRNA: 3'- uuuGCGUUGGCgc--GUCGGCAagUGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 96413 | 0.68 | 0.789303 |
Target: 5'- --cCGCuacCCGCGCGGCgacgCGCCCg -3' miRNA: 3'- uuuGCGuu-GGCGCGUCGgcaaGUGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 99798 | 0.68 | 0.802166 |
Target: 5'- -uGCGCGACCGCugguacaagggcgacGCgGGCCGguugCGCCg -3' miRNA: 3'- uuUGCGUUGGCG---------------CG-UCGGCaa--GUGGg -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 73775 | 0.68 | 0.807584 |
Target: 5'- uGGCGCGG--GCGUAGCCucGUUCGCCa -3' miRNA: 3'- uUUGCGUUggCGCGUCGG--CAAGUGGg -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 73596 | 0.68 | 0.798521 |
Target: 5'- --uUGCAGCCgGCGCaacgaAGUCGUUUGCCa -3' miRNA: 3'- uuuGCGUUGG-CGCG-----UCGGCAAGUGGg -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 55017 | 0.68 | 0.789303 |
Target: 5'- uGGugGCAAuggcCCGUGC-GCCGUgCACCa -3' miRNA: 3'- -UUugCGUU----GGCGCGuCGGCAaGUGGg -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 130990 | 0.68 | 0.779938 |
Target: 5'- -uGCGCcugaCGCGCcGCUGUUCACUg -3' miRNA: 3'- uuUGCGuug-GCGCGuCGGCAAGUGGg -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 122241 | 0.68 | 0.770436 |
Target: 5'- ---aGCAGCagacaaGCGuCAGCCGUcUCGCCg -3' miRNA: 3'- uuugCGUUGg-----CGC-GUCGGCA-AGUGGg -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 96065 | 0.68 | 0.779938 |
Target: 5'- cGAACGCuACCGCGUuauGCUGU--AUCCg -3' miRNA: 3'- -UUUGCGuUGGCGCGu--CGGCAagUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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