Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22890 | 3' | -55.7 | NC_005137.2 | + | 73775 | 0.68 | 0.807584 |
Target: 5'- uGGCGCGG--GCGUAGCCucGUUCGCCa -3' miRNA: 3'- uUUGCGUUggCGCGUCGG--CAAGUGGg -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 80915 | 0.72 | 0.566202 |
Target: 5'- -cGCGCAuUUGCGCGGCCGUggaggCGCgCg -3' miRNA: 3'- uuUGCGUuGGCGCGUCGGCAa----GUGgG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 83779 | 0.67 | 0.850254 |
Target: 5'- --cCGCAGCgGCGCAGUC-UUCAgCg -3' miRNA: 3'- uuuGCGUUGgCGCGUCGGcAAGUgGg -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 85045 | 0.73 | 0.505721 |
Target: 5'- --cUGC-ACCGCGUAGCCGUuuUUACUCu -3' miRNA: 3'- uuuGCGuUGGCGCGUCGGCA--AGUGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 85270 | 0.67 | 0.8421 |
Target: 5'- cGGCGUAACCcuugGCGCGGCU----GCCCg -3' miRNA: 3'- uUUGCGUUGG----CGCGUCGGcaagUGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 85551 | 0.71 | 0.607555 |
Target: 5'- cAAACGCGugCGCGU-GCUGcgcCGCCCg -3' miRNA: 3'- -UUUGCGUugGCGCGuCGGCaa-GUGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 87319 | 0.67 | 0.849448 |
Target: 5'- gAAGCGCGucgcgaaACgGCGCAGCUGgccaACCg -3' miRNA: 3'- -UUUGCGU-------UGgCGCGUCGGCaag-UGGg -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 88503 | 0.71 | 0.61796 |
Target: 5'- gGAAUGUcGCCGCGCAGCaag-CGCCg -3' miRNA: 3'- -UUUGCGuUGGCGCGUCGgcaaGUGGg -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 91156 | 0.66 | 0.858204 |
Target: 5'- aGAGCGCaAACCGCGU-GCUcguGUUCACg- -3' miRNA: 3'- -UUUGCG-UUGGCGCGuCGG---CAAGUGgg -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 96042 | 0.67 | 0.815599 |
Target: 5'- gGAACGCGACaguGCGCAG-CGUUucuugaaCACUCg -3' miRNA: 3'- -UUUGCGUUGg--CGCGUCgGCAA-------GUGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 96065 | 0.68 | 0.779938 |
Target: 5'- cGAACGCuACCGCGUuauGCUGU--AUCCg -3' miRNA: 3'- -UUUGCGuUGGCGCGu--CGGCAagUGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 96312 | 0.67 | 0.825205 |
Target: 5'- -cACGCcGgCGCGCAaguguggacuGCCGaaacguUUCACCCa -3' miRNA: 3'- uuUGCGuUgGCGCGU----------CGGC------AAGUGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 96413 | 0.68 | 0.789303 |
Target: 5'- --cCGCuacCCGCGCGGCgacgCGCCCg -3' miRNA: 3'- uuuGCGuu-GGCGCGUCGgcaaGUGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 97339 | 0.66 | 0.865941 |
Target: 5'- aAGACGCAA-CGCGCuccaggcucAGCgGUUUGCCg -3' miRNA: 3'- -UUUGCGUUgGCGCG---------UCGgCAAGUGGg -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 98446 | 0.72 | 0.555966 |
Target: 5'- aAAGCGCAagcaGCCGCGUgcacGGCCGUaUGCCg -3' miRNA: 3'- -UUUGCGU----UGGCGCG----UCGGCAaGUGGg -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 98653 | 0.66 | 0.893983 |
Target: 5'- uGGCGCAcguuaauaugcaaAUCGUGCuuGCCGUUC-UCCg -3' miRNA: 3'- uUUGCGU-------------UGGCGCGu-CGGCAAGuGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 98811 | 0.66 | 0.865941 |
Target: 5'- cAAACGCcGCCGUGC-GCCGacCGCg- -3' miRNA: 3'- -UUUGCGuUGGCGCGuCGGCaaGUGgg -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 99798 | 0.68 | 0.802166 |
Target: 5'- -uGCGCGACCGCugguacaagggcgacGCgGGCCGguugCGCCg -3' miRNA: 3'- uuUGCGUUGGCG---------------CG-UCGGCaa--GUGGg -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 99939 | 0.67 | 0.819992 |
Target: 5'- cGACGCGcacgcauguuggacaACgGcCGCGGCCGcgCGCCUc -3' miRNA: 3'- uUUGCGU---------------UGgC-GCGUCGGCaaGUGGG- -5' |
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22890 | 3' | -55.7 | NC_005137.2 | + | 100045 | 0.73 | 0.495899 |
Target: 5'- cGACGCGGC-GCGCGGCgCGUUCAgCa -3' miRNA: 3'- uUUGCGUUGgCGCGUCG-GCAAGUgGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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