miRNA display CGI


Results 61 - 74 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22890 3' -55.7 NC_005137.2 + 106679 0.67 0.816481
Target:  5'- --uUGCAACCGacaaCGGCCGU--GCCCg -3'
miRNA:   3'- uuuGCGUUGGCgc--GUCGGCAagUGGG- -5'
22890 3' -55.7 NC_005137.2 + 106710 0.72 0.566202
Target:  5'- --cCGCAGCCGCaaacGCcGCCGUUugauugCGCCCa -3'
miRNA:   3'- uuuGCGUUGGCG----CGuCGGCAA------GUGGG- -5'
22890 3' -55.7 NC_005137.2 + 109427 0.76 0.361027
Target:  5'- --cCGCGGCCuauGCGCGGCCcaucggUCACCCa -3'
miRNA:   3'- uuuGCGUUGG---CGCGUCGGca----AGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 109776 0.7 0.690631
Target:  5'- uGACaGCGGCC-CGCAGCg--UCGCCCa -3'
miRNA:   3'- uUUG-CGUUGGcGCGUCGgcaAGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 112399 0.67 0.833748
Target:  5'- -uGCGCGAUCGCGCA-CgGcgCGCCa -3'
miRNA:   3'- uuUGCGUUGGCGCGUcGgCaaGUGGg -5'
22890 3' -55.7 NC_005137.2 + 115752 0.69 0.731245
Target:  5'- cAACGCAACgugcgCGCGCGGC-GUUUuCCCu -3'
miRNA:   3'- uUUGCGUUG-----GCGCGUCGgCAAGuGGG- -5'
22890 3' -55.7 NC_005137.2 + 116884 0.7 0.659607
Target:  5'- -uGCGCugccCCGCGacuugacaaCGGCCG-UCACCCg -3'
miRNA:   3'- uuUGCGuu--GGCGC---------GUCGGCaAGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 119715 0.69 0.741201
Target:  5'- -uACGCAucccGCCGCGCAGC-----GCCCa -3'
miRNA:   3'- uuUGCGU----UGGCGCGUCGgcaagUGGG- -5'
22890 3' -55.7 NC_005137.2 + 122241 0.68 0.770436
Target:  5'- ---aGCAGCagacaaGCGuCAGCCGUcUCGCCg -3'
miRNA:   3'- uuugCGUUGg-----CGC-GUCGGCA-AGUGGg -5'
22890 3' -55.7 NC_005137.2 + 125046 0.66 0.865941
Target:  5'- cAACGgAGCCGgGCGGCgCGg-CGCCg -3'
miRNA:   3'- uUUGCgUUGGCgCGUCG-GCaaGUGGg -5'
22890 3' -55.7 NC_005137.2 + 128772 0.67 0.839614
Target:  5'- uAAACGCGAUCGCGC-GCCcuaaaauauaagacGUUC-UCCg -3'
miRNA:   3'- -UUUGCGUUGGCGCGuCGG--------------CAAGuGGG- -5'
22890 3' -55.7 NC_005137.2 + 129503 0.69 0.731245
Target:  5'- cAACGCGucggcGCCGCGCGGCgGaaugUACCg -3'
miRNA:   3'- uUUGCGU-----UGGCGCGUCGgCaa--GUGGg -5'
22890 3' -55.7 NC_005137.2 + 130850 0.74 0.457524
Target:  5'- aGAACGCGuuggaCGCGCAGCCcg-CGCCUg -3'
miRNA:   3'- -UUUGCGUug---GCGCGUCGGcaaGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 130990 0.68 0.779938
Target:  5'- -uGCGCcugaCGCGCcGCUGUUCACUg -3'
miRNA:   3'- uuUGCGuug-GCGCGuCGGCAAGUGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.