miRNA display CGI


Results 61 - 74 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22890 3' -55.7 NC_005137.2 + 98811 0.66 0.865941
Target:  5'- cAAACGCcGCCGUGC-GCCGacCGCg- -3'
miRNA:   3'- -UUUGCGuUGGCGCGuCGGCaaGUGgg -5'
22890 3' -55.7 NC_005137.2 + 67360 0.66 0.865941
Target:  5'- cGGGCGCGACgcgaUGCGCGaCCGU-CGCCg -3'
miRNA:   3'- -UUUGCGUUG----GCGCGUcGGCAaGUGGg -5'
22890 3' -55.7 NC_005137.2 + 35519 0.67 0.850254
Target:  5'- cGAUGCGcCCGUGCGGC-GcgCAUCCg -3'
miRNA:   3'- uUUGCGUuGGCGCGUCGgCaaGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 60971 0.67 0.850254
Target:  5'- gGGGCGCAccacguaCGCGguGCCGUgggaUugCCg -3'
miRNA:   3'- -UUUGCGUug-----GCGCguCGGCAa---GugGG- -5'
22890 3' -55.7 NC_005137.2 + 83779 0.67 0.850254
Target:  5'- --cCGCAGCgGCGCAGUC-UUCAgCg -3'
miRNA:   3'- uuuGCGUUGgCGCGUCGGcAAGUgGg -5'
22890 3' -55.7 NC_005137.2 + 34579 0.67 0.833748
Target:  5'- cAAACGCAACgCG-GCGGgCGcgUCGCCg -3'
miRNA:   3'- -UUUGCGUUG-GCgCGUCgGCa-AGUGGg -5'
22890 3' -55.7 NC_005137.2 + 51841 0.67 0.825205
Target:  5'- aAGACuGCAGCCGCaGCAGUacgUUACCa -3'
miRNA:   3'- -UUUG-CGUUGGCG-CGUCGgcaAGUGGg -5'
22890 3' -55.7 NC_005137.2 + 96042 0.67 0.815599
Target:  5'- gGAACGCGACaguGCGCAG-CGUUucuugaaCACUCg -3'
miRNA:   3'- -UUUGCGUUGg--CGCGUCgGCAA-------GUGGG- -5'
22890 3' -55.7 NC_005137.2 + 99798 0.68 0.802166
Target:  5'- -uGCGCGACCGCugguacaagggcgacGCgGGCCGguugCGCCg -3'
miRNA:   3'- uuUGCGUUGGCG---------------CG-UCGGCaa--GUGGg -5'
22890 3' -55.7 NC_005137.2 + 73596 0.68 0.798521
Target:  5'- --uUGCAGCCgGCGCaacgaAGUCGUUUGCCa -3'
miRNA:   3'- uuuGCGUUGG-CGCG-----UCGGCAAGUGGg -5'
22890 3' -55.7 NC_005137.2 + 55017 0.68 0.789303
Target:  5'- uGGugGCAAuggcCCGUGC-GCCGUgCACCa -3'
miRNA:   3'- -UUugCGUU----GGCGCGuCGGCAaGUGGg -5'
22890 3' -55.7 NC_005137.2 + 130990 0.68 0.779938
Target:  5'- -uGCGCcugaCGCGCcGCUGUUCACUg -3'
miRNA:   3'- uuUGCGuug-GCGCGuCGGCAAGUGGg -5'
22890 3' -55.7 NC_005137.2 + 8056 0.68 0.770436
Target:  5'- --uUGCAACCGCGCAacGCCuUUUauacuuGCCCc -3'
miRNA:   3'- uuuGCGUUGGCGCGU--CGGcAAG------UGGG- -5'
22890 3' -55.7 NC_005137.2 + 13158 0.66 0.894656
Target:  5'- cGGACGCGuCCGUGCuGGUgGUU-GCCCc -3'
miRNA:   3'- -UUUGCGUuGGCGCG-UCGgCAAgUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.