miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22890 3' -55.7 NC_005137.2 + 128772 0.67 0.839614
Target:  5'- uAAACGCGAUCGCGC-GCCcuaaaauauaagacGUUC-UCCg -3'
miRNA:   3'- -UUUGCGUUGGCGCGuCGG--------------CAAGuGGG- -5'
22890 3' -55.7 NC_005137.2 + 34579 0.67 0.833748
Target:  5'- cAAACGCAACgCG-GCGGgCGcgUCGCCg -3'
miRNA:   3'- -UUUGCGUUG-GCgCGUCgGCa-AGUGGg -5'
22890 3' -55.7 NC_005137.2 + 48890 0.67 0.833748
Target:  5'- --cUGC-GCCGCGCuGCgGcUUCGCCUg -3'
miRNA:   3'- uuuGCGuUGGCGCGuCGgC-AAGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 112399 0.67 0.833748
Target:  5'- -uGCGCGAUCGCGCA-CgGcgCGCCa -3'
miRNA:   3'- uuUGCGUUGGCGCGUcGgCaaGUGGg -5'
22890 3' -55.7 NC_005137.2 + 51841 0.67 0.825205
Target:  5'- aAGACuGCAGCCGCaGCAGUacgUUACCa -3'
miRNA:   3'- -UUUG-CGUUGGCG-CGUCGgcaAGUGGg -5'
22890 3' -55.7 NC_005137.2 + 96312 0.67 0.825205
Target:  5'- -cACGCcGgCGCGCAaguguggacuGCCGaaacguUUCACCCa -3'
miRNA:   3'- uuUGCGuUgGCGCGU----------CGGC------AAGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 32470 0.67 0.825205
Target:  5'- aAAACGCAGCauCGCGcCAGCaauuuGUUaACCCa -3'
miRNA:   3'- -UUUGCGUUG--GCGC-GUCGg----CAAgUGGG- -5'
22890 3' -55.7 NC_005137.2 + 99939 0.67 0.819992
Target:  5'- cGACGCGcacgcauguuggacaACgGcCGCGGCCGcgCGCCUc -3'
miRNA:   3'- uUUGCGU---------------UGgC-GCGUCGGCaaGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 7188 0.67 0.816481
Target:  5'- cAGCGCAuuucgaACCgGCGCGuGCCGUcuuccaauaacUCAUCCc -3'
miRNA:   3'- uUUGCGU------UGG-CGCGU-CGGCA-----------AGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 106679 0.67 0.816481
Target:  5'- --uUGCAACCGacaaCGGCCGU--GCCCg -3'
miRNA:   3'- uuuGCGUUGGCgc--GUCGGCAagUGGG- -5'
22890 3' -55.7 NC_005137.2 + 31677 0.67 0.816481
Target:  5'- cGGACGaCAccGCCGCGUGGuuGUgcggUCGCaCCg -3'
miRNA:   3'- -UUUGC-GU--UGGCGCGUCggCA----AGUG-GG- -5'
22890 3' -55.7 NC_005137.2 + 96042 0.67 0.815599
Target:  5'- gGAACGCGACaguGCGCAG-CGUUucuugaaCACUCg -3'
miRNA:   3'- -UUUGCGUUGg--CGCGUCgGCAA-------GUGGG- -5'
22890 3' -55.7 NC_005137.2 + 73775 0.68 0.807584
Target:  5'- uGGCGCGG--GCGUAGCCucGUUCGCCa -3'
miRNA:   3'- uUUGCGUUggCGCGUCGG--CAAGUGGg -5'
22890 3' -55.7 NC_005137.2 + 99798 0.68 0.802166
Target:  5'- -uGCGCGACCGCugguacaagggcgacGCgGGCCGguugCGCCg -3'
miRNA:   3'- uuUGCGUUGGCG---------------CG-UCGGCaa--GUGGg -5'
22890 3' -55.7 NC_005137.2 + 73596 0.68 0.798521
Target:  5'- --uUGCAGCCgGCGCaacgaAGUCGUUUGCCa -3'
miRNA:   3'- uuuGCGUUGG-CGCG-----UCGGCAAGUGGg -5'
22890 3' -55.7 NC_005137.2 + 96413 0.68 0.789303
Target:  5'- --cCGCuacCCGCGCGGCgacgCGCCCg -3'
miRNA:   3'- uuuGCGuu-GGCGCGUCGgcaaGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 55017 0.68 0.789303
Target:  5'- uGGugGCAAuggcCCGUGC-GCCGUgCACCa -3'
miRNA:   3'- -UUugCGUU----GGCGCGuCGGCAaGUGGg -5'
22890 3' -55.7 NC_005137.2 + 130990 0.68 0.779938
Target:  5'- -uGCGCcugaCGCGCcGCUGUUCACUg -3'
miRNA:   3'- uuUGCGuug-GCGCGuCGGCAAGUGGg -5'
22890 3' -55.7 NC_005137.2 + 96065 0.68 0.779938
Target:  5'- cGAACGCuACCGCGUuauGCUGU--AUCCg -3'
miRNA:   3'- -UUUGCGuUGGCGCGu--CGGCAagUGGG- -5'
22890 3' -55.7 NC_005137.2 + 122241 0.68 0.770436
Target:  5'- ---aGCAGCagacaaGCGuCAGCCGUcUCGCCg -3'
miRNA:   3'- uuugCGUUGg-----CGC-GUCGGCA-AGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.