miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22890 5' -52.9 NC_005137.2 + 78633 0.66 0.944435
Target:  5'- cGCGGCccgucaUGuCGGAGAaaaaCUGCACAAUAa -3'
miRNA:   3'- -CGCCG------AC-GCCUUUac--GACGUGUUGUa -5'
22890 5' -52.9 NC_005137.2 + 116810 0.66 0.944435
Target:  5'- aUGGCUGCGuGuug-GCagGCGCGGCAg -3'
miRNA:   3'- cGCCGACGC-CuuuaCGa-CGUGUUGUa -5'
22890 5' -52.9 NC_005137.2 + 56286 0.66 0.939605
Target:  5'- aUGGaCUGC-GAAGUGCcGCugGACGUg -3'
miRNA:   3'- cGCC-GACGcCUUUACGaCGugUUGUA- -5'
22890 5' -52.9 NC_005137.2 + 105128 0.67 0.923536
Target:  5'- --aGCUGCGuacuuuUGCUGCACGGCGa -3'
miRNA:   3'- cgcCGACGCcuuu--ACGACGUGUUGUa -5'
22890 5' -52.9 NC_005137.2 + 775 0.67 0.911503
Target:  5'- uUGGCgGCGGAGGcgGUgGCAUAACAUu -3'
miRNA:   3'- cGCCGaCGCCUUUa-CGaCGUGUUGUA- -5'
22890 5' -52.9 NC_005137.2 + 89934 0.68 0.884321
Target:  5'- aGCGGCuUGCGuGcguuguuauaaAAAUGCUGCACcgaauGCAa -3'
miRNA:   3'- -CGCCG-ACGC-C-----------UUUACGACGUGu----UGUa -5'
22890 5' -52.9 NC_005137.2 + 81690 0.68 0.869231
Target:  5'- cCGGUgucggGCGGAacaccaucaAAUGCUGCuCGACAc -3'
miRNA:   3'- cGCCGa----CGCCU---------UUACGACGuGUUGUa -5'
22890 5' -52.9 NC_005137.2 + 33779 0.69 0.844847
Target:  5'- cGCGGCgGCGuu-GUGCUGUGcCAACGUu -3'
miRNA:   3'- -CGCCGaCGCcuuUACGACGU-GUUGUA- -5'
22890 5' -52.9 NC_005137.2 + 37352 0.69 0.844847
Target:  5'- cGCGGCcgGCGGAGAUuucgucGUcGCACaAACAUg -3'
miRNA:   3'- -CGCCGa-CGCCUUUA------CGaCGUG-UUGUA- -5'
22890 5' -52.9 NC_005137.2 + 32950 0.7 0.780895
Target:  5'- uGCGGCcuuUGCGcGAAAggcGCUGCugGACc- -3'
miRNA:   3'- -CGCCG---ACGC-CUUUa--CGACGugUUGua -5'
22890 5' -52.9 NC_005137.2 + 103423 0.7 0.780895
Target:  5'- uGCGGCUGCGGu--UGC-GUACcauGCAa -3'
miRNA:   3'- -CGCCGACGCCuuuACGaCGUGu--UGUa -5'
22890 5' -52.9 NC_005137.2 + 59864 0.71 0.737812
Target:  5'- uGCGGCUGCGuuugcguuuaaauuGAuaguguUGCUGCGCAAUu- -3'
miRNA:   3'- -CGCCGACGC--------------CUuu----ACGACGUGUUGua -5'
22890 5' -52.9 NC_005137.2 + 102886 0.72 0.699203
Target:  5'- -gGGCUGUgacGGggGuuUGCUGCACAcgGCGUa -3'
miRNA:   3'- cgCCGACG---CCuuU--ACGACGUGU--UGUA- -5'
22890 5' -52.9 NC_005137.2 + 481 0.74 0.59202
Target:  5'- gGCGGCUGCccagcGUGUUGUACAACAc -3'
miRNA:   3'- -CGCCGACGccuu-UACGACGUGUUGUa -5'
22890 5' -52.9 NC_005137.2 + 107005 0.76 0.438985
Target:  5'- cGUGGUUGCGcAAAcGCUGCGCAGCGa -3'
miRNA:   3'- -CGCCGACGCcUUUaCGACGUGUUGUa -5'
22890 5' -52.9 NC_005137.2 + 33779 0.77 0.429555
Target:  5'- cCGGCUGa-GAGcAUGCUGCGCGACAUg -3'
miRNA:   3'- cGCCGACgcCUU-UACGACGUGUUGUA- -5'
22890 5' -52.9 NC_005137.2 + 24311 0.77 0.420245
Target:  5'- uGCGGCUGCGGugGUGgCggGCACGGCc- -3'
miRNA:   3'- -CGCCGACGCCuuUAC-Ga-CGUGUUGua -5'
22890 5' -52.9 NC_005137.2 + 103820 0.78 0.350377
Target:  5'- uGCGGCgGCGGGu-UGgUGCACGGCAUa -3'
miRNA:   3'- -CGCCGaCGCCUuuACgACGUGUUGUA- -5'
22890 5' -52.9 NC_005137.2 + 50813 1.07 0.00489
Target:  5'- gGCGGCUGCGGAAAUGCUGCACAACAUu -3'
miRNA:   3'- -CGCCGACGCCUUUACGACGUGUUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.