miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22891 3' -61 NC_005137.2 + 81785 0.7 0.494069
Target:  5'- aCGGCCCGCCCGAAgccaagUGCGCaaacaacACGUu -3'
miRNA:   3'- gGCUGGGCGGGCUU------GCGCGgc-----UGCAc -5'
22891 3' -61 NC_005137.2 + 123702 0.7 0.484941
Target:  5'- aCCGcauCCUGCCCGGGCaaaGCGaCCGcaACGUGu -3'
miRNA:   3'- -GGCu--GGGCGGGCUUG---CGC-GGC--UGCAC- -5'
22891 3' -61 NC_005137.2 + 95487 0.71 0.40682
Target:  5'- aCGGCCgGCCgGAACgauuGCGuaGACGUGg -3'
miRNA:   3'- gGCUGGgCGGgCUUG----CGCggCUGCAC- -5'
22891 3' -61 NC_005137.2 + 42980 0.72 0.390555
Target:  5'- gUGGCCCGCCuCGGcgguggcCGCGCCGGCa-- -3'
miRNA:   3'- gGCUGGGCGG-GCUu------GCGCGGCUGcac -5'
22891 3' -61 NC_005137.2 + 32977 0.8 0.119779
Target:  5'- -gGACCCGCUCGcAGCGC-CCGACGUGc -3'
miRNA:   3'- ggCUGGGCGGGC-UUGCGcGGCUGCAC- -5'
22891 3' -61 NC_005137.2 + 64958 0.68 0.608385
Target:  5'- ----aCCGCCa--ACGUGCCGACGUGc -3'
miRNA:   3'- ggcugGGCGGgcuUGCGCGGCUGCAC- -5'
22891 3' -61 NC_005137.2 + 129356 0.68 0.608385
Target:  5'- aCCGACCgaGCCCaAACGUGCCGuuuuGCa-- -3'
miRNA:   3'- -GGCUGGg-CGGGcUUGCGCGGC----UGcac -5'
22891 3' -61 NC_005137.2 + 8941 0.67 0.627934
Target:  5'- cCCGGCcgCCGaCCCGGACaCGCCGcaauuUGUGg -3'
miRNA:   3'- -GGCUG--GGC-GGGCUUGcGCGGCu----GCAC- -5'
22891 3' -61 NC_005137.2 + 29507 0.67 0.63576
Target:  5'- uCCGACCCGUUCuauuauaugcacGACGCGauaaaaCGGCGUGu -3'
miRNA:   3'- -GGCUGGGCGGGc-----------UUGCGCg-----GCUGCAC- -5'
22891 3' -61 NC_005137.2 + 100209 0.67 0.657263
Target:  5'- aCGugUUGCUgGuGCGCGUCGACGa- -3'
miRNA:   3'- gGCugGGCGGgCuUGCGCGGCUGCac -5'
22891 3' -61 NC_005137.2 + 71727 0.67 0.664089
Target:  5'- aCGACCUGCCCagccauaaagcuaaGAGCGUGCgGAaaaaGUu -3'
miRNA:   3'- gGCUGGGCGGG--------------CUUGCGCGgCUg---CAc -5'
22891 3' -61 NC_005137.2 + 20258 0.67 0.676735
Target:  5'- aCCGugCCGUacaCCGAuCGC-CCGGCGc- -3'
miRNA:   3'- -GGCugGGCG---GGCUuGCGcGGCUGCac -5'
22891 3' -61 NC_005137.2 + 124025 0.67 0.676735
Target:  5'- aCCG-CUCGUCCGugUGCGCCagcauCGUGg -3'
miRNA:   3'- -GGCuGGGCGGGCuuGCGCGGcu---GCAC- -5'
22891 3' -61 NC_005137.2 + 108559 0.66 0.7341
Target:  5'- gCCGACggagcgcacgUUGCCCaAAU-CGCCGACGUGa -3'
miRNA:   3'- -GGCUG----------GGCGGGcUUGcGCGGCUGCAC- -5'
22891 3' -61 NC_005137.2 + 46438 1.09 0.001183
Target:  5'- cCCGACCCGCCCGAACGCGCCGACGUGu -3'
miRNA:   3'- -GGCUGGGCGGGCUUGCGCGGCUGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.