Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22891 | 3' | -61 | NC_005137.2 | + | 2442 | 0.69 | 0.550321 |
Target: 5'- gCCGACgUGCCC--GCGC-CCGACGa- -3' miRNA: 3'- -GGCUGgGCGGGcuUGCGcGGCUGCac -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 8941 | 0.67 | 0.627934 |
Target: 5'- cCCGGCcgCCGaCCCGGACaCGCCGcaauuUGUGg -3' miRNA: 3'- -GGCUG--GGC-GGGCUUGcGCGGCu----GCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 11267 | 0.66 | 0.705673 |
Target: 5'- gCGGCgcugaCGUCCGcuACGCGCUGACGc- -3' miRNA: 3'- gGCUGg----GCGGGCu-UGCGCGGCUGCac -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 20258 | 0.67 | 0.676735 |
Target: 5'- aCCGugCCGUacaCCGAuCGC-CCGGCGc- -3' miRNA: 3'- -GGCugGGCG---GGCUuGCGcGGCUGCac -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 28054 | 0.68 | 0.579198 |
Target: 5'- gCGACgCgCGCUgGGAUGCGCCaGACGg- -3' miRNA: 3'- gGCUG-G-GCGGgCUUGCGCGG-CUGCac -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 29507 | 0.67 | 0.63576 |
Target: 5'- uCCGACCCGUUCuauuauaugcacGACGCGauaaaaCGGCGUGu -3' miRNA: 3'- -GGCUGGGCGGGc-----------UUGCGCg-----GCUGCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 31680 | 0.68 | 0.618155 |
Target: 5'- aCGACaCCGCCgcgugguugugCGGuCGCaCCGACGUGu -3' miRNA: 3'- gGCUG-GGCGG-----------GCUuGCGcGGCUGCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 32977 | 0.8 | 0.119779 |
Target: 5'- -gGACCCGCUCGcAGCGC-CCGACGUGc -3' miRNA: 3'- ggCUGGGCGGGC-UUGCGcGGCUGCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 34665 | 0.73 | 0.346594 |
Target: 5'- cCCGACCCGCCaccgcaccagcaaGCGCCGugGg- -3' miRNA: 3'- -GGCUGGGCGGgcuug--------CGCGGCugCac -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 34690 | 0.69 | 0.512553 |
Target: 5'- uUCGGCa-GUCCacacuuGCGCGCCGGCGUGu -3' miRNA: 3'- -GGCUGggCGGGcu----UGCGCGGCUGCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 35354 | 0.67 | 0.675764 |
Target: 5'- gCCGACCCGaCCaacaacaCGcAgGCGCCGcUGUGg -3' miRNA: 3'- -GGCUGGGC-GG-------GCuUgCGCGGCuGCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 35693 | 0.68 | 0.608385 |
Target: 5'- cCCGAUUCGCUaaacaacguaaaCGGGCGCGuuGuCGUGc -3' miRNA: 3'- -GGCUGGGCGG------------GCUUGCGCggCuGCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 42980 | 0.72 | 0.390555 |
Target: 5'- gUGGCCCGCCuCGGcgguggcCGCGCCGGCa-- -3' miRNA: 3'- gGCUGGGCGG-GCUu------GCGCGGCUGcac -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 46438 | 1.09 | 0.001183 |
Target: 5'- cCCGACCCGCCCGAACGCGCCGACGUGu -3' miRNA: 3'- -GGCUGGGCGGGCUUGCGCGGCUGCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 56143 | 0.67 | 0.627934 |
Target: 5'- -aGACCCGUCCGAcGCaGCGaCCGcACGa- -3' miRNA: 3'- ggCUGGGCGGGCU-UG-CGC-GGC-UGCac -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 56661 | 0.66 | 0.7341 |
Target: 5'- gCGACCuCGUgcuugCCGAcgGCGCuGUgGACGUGa -3' miRNA: 3'- gGCUGG-GCG-----GGCU--UGCG-CGgCUGCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 64958 | 0.68 | 0.608385 |
Target: 5'- ----aCCGCCa--ACGUGCCGACGUGc -3' miRNA: 3'- ggcugGGCGGgcuUGCGCGGCUGCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 69487 | 0.66 | 0.705673 |
Target: 5'- aCGACCCGUauUCGcuaAACGCGuuGACa-- -3' miRNA: 3'- gGCUGGGCG--GGC---UUGCGCggCUGcac -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 71727 | 0.67 | 0.664089 |
Target: 5'- aCGACCUGCCCagccauaaagcuaaGAGCGUGCgGAaaaaGUu -3' miRNA: 3'- gGCUGGGCGGG--------------CUUGCGCGgCUg---CAc -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 81785 | 0.7 | 0.494069 |
Target: 5'- aCGGCCCGCCCGAAgccaagUGCGCaaacaacACGUu -3' miRNA: 3'- gGCUGGGCGGGCUU------GCGCGgc-----UGCAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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