miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22891 3' -61 NC_005137.2 + 35693 0.68 0.608385
Target:  5'- cCCGAUUCGCUaaacaacguaaaCGGGCGCGuuGuCGUGc -3'
miRNA:   3'- -GGCUGGGCGG------------GCUUGCGCggCuGCAC- -5'
22891 3' -61 NC_005137.2 + 96412 0.68 0.598631
Target:  5'- aCCGcuACCCGCgCGGcgACGCGCCcgccGCGUu -3'
miRNA:   3'- -GGC--UGGGCGgGCU--UGCGCGGc---UGCAc -5'
22891 3' -61 NC_005137.2 + 28054 0.68 0.579198
Target:  5'- gCGACgCgCGCUgGGAUGCGCCaGACGg- -3'
miRNA:   3'- gGCUG-G-GCGGgCUUGCGCGG-CUGCac -5'
22891 3' -61 NC_005137.2 + 99753 0.69 0.559902
Target:  5'- -aGGCCCGagUUGAGCGCGCaCGACGc- -3'
miRNA:   3'- ggCUGGGCg-GGCUUGCGCG-GCUGCac -5'
22891 3' -61 NC_005137.2 + 2442 0.69 0.550321
Target:  5'- gCCGACgUGCCC--GCGC-CCGACGa- -3'
miRNA:   3'- -GGCUGgGCGGGcuUGCGcGGCUGCac -5'
22891 3' -61 NC_005137.2 + 110628 0.69 0.54079
Target:  5'- aCGGCCgUGCaCaAACGCGCCGACGg- -3'
miRNA:   3'- gGCUGG-GCGgGcUUGCGCGGCUGCac -5'
22891 3' -61 NC_005137.2 + 34690 0.69 0.512553
Target:  5'- uUCGGCa-GUCCacacuuGCGCGCCGGCGUGu -3'
miRNA:   3'- -GGCUGggCGGGcu----UGCGCGGCUGCAC- -5'
22891 3' -61 NC_005137.2 + 81785 0.7 0.494069
Target:  5'- aCGGCCCGCCCGAAgccaagUGCGCaaacaacACGUu -3'
miRNA:   3'- gGCUGGGCGGGCUU------GCGCGgc-----UGCAc -5'
22891 3' -61 NC_005137.2 + 123702 0.7 0.484941
Target:  5'- aCCGcauCCUGCCCGGGCaaaGCGaCCGcaACGUGu -3'
miRNA:   3'- -GGCu--GGGCGGGCUUG---CGC-GGC--UGCAC- -5'
22891 3' -61 NC_005137.2 + 95487 0.71 0.40682
Target:  5'- aCGGCCgGCCgGAACgauuGCGuaGACGUGg -3'
miRNA:   3'- gGCUGGgCGGgCUUG----CGCggCUGCAC- -5'
22891 3' -61 NC_005137.2 + 42980 0.72 0.390555
Target:  5'- gUGGCCCGCCuCGGcgguggcCGCGCCGGCa-- -3'
miRNA:   3'- gGCUGGGCGG-GCUu------GCGCGGCUGcac -5'
22891 3' -61 NC_005137.2 + 34665 0.73 0.346594
Target:  5'- cCCGACCCGCCaccgcaccagcaaGCGCCGugGg- -3'
miRNA:   3'- -GGCUGGGCGGgcuug--------CGCGGCugCac -5'
22891 3' -61 NC_005137.2 + 110815 0.74 0.276458
Target:  5'- aUCGACgCCGCCCGccGACGCGCaagaGuCGUGc -3'
miRNA:   3'- -GGCUG-GGCGGGC--UUGCGCGg---CuGCAC- -5'
22891 3' -61 NC_005137.2 + 32977 0.8 0.119779
Target:  5'- -gGACCCGCUCGcAGCGC-CCGACGUGc -3'
miRNA:   3'- ggCUGGGCGGGC-UUGCGcGGCUGCAC- -5'
22891 3' -61 NC_005137.2 + 46438 1.09 0.001183
Target:  5'- cCCGACCCGCCCGAACGCGCCGACGUGu -3'
miRNA:   3'- -GGCUGGGCGGGCUUGCGCGGCUGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.