miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22891 5' -44.1 NC_005137.2 + 7753 0.66 0.999999
Target:  5'- uGUCAUUGUaauCGUGUUGGGCGGu-- -3'
miRNA:   3'- -UAGUAAUAcauGCGCAACUUGCUugc -5'
22891 5' -44.1 NC_005137.2 + 47786 0.66 0.999999
Target:  5'- cGUCGU--UGUACaGCG-UGAGCGggUa -3'
miRNA:   3'- -UAGUAauACAUG-CGCaACUUGCuuGc -5'
22891 5' -44.1 NC_005137.2 + 40762 0.66 0.999996
Target:  5'- --aGUUGUGUuuGCGCGUUGA-CGcAACu -3'
miRNA:   3'- uagUAAUACA--UGCGCAACUuGC-UUGc -5'
22891 5' -44.1 NC_005137.2 + 95578 0.66 0.999996
Target:  5'- -gCAgcGUGUugGCGUUGuaguuAAUGAugGg -3'
miRNA:   3'- uaGUaaUACAugCGCAAC-----UUGCUugC- -5'
22891 5' -44.1 NC_005137.2 + 18849 0.66 0.999996
Target:  5'- ------cUGUACGCGUUGugggGCGaAACGg -3'
miRNA:   3'- uaguaauACAUGCGCAACu---UGC-UUGC- -5'
22891 5' -44.1 NC_005137.2 + 80714 0.67 0.999994
Target:  5'- cAUCAaaaguuUGUGCGCGUUGGGCa---- -3'
miRNA:   3'- -UAGUaau---ACAUGCGCAACUUGcuugc -5'
22891 5' -44.1 NC_005137.2 + 52908 0.67 0.999991
Target:  5'- -aCGUUGggcacGUACGCGUacAACGAAUGa -3'
miRNA:   3'- uaGUAAUa----CAUGCGCAacUUGCUUGC- -5'
22891 5' -44.1 NC_005137.2 + 13835 0.67 0.999991
Target:  5'- cGUCGUaUAUGUAguCGCGUUGGAUaagcuucacaaaGGGCGa -3'
miRNA:   3'- -UAGUA-AUACAU--GCGCAACUUG------------CUUGC- -5'
22891 5' -44.1 NC_005137.2 + 95321 0.68 0.999967
Target:  5'- aAUCGUauUGUuuUGCGUUGGaccGCGAACGc -3'
miRNA:   3'- -UAGUAauACAu-GCGCAACU---UGCUUGC- -5'
22891 5' -44.1 NC_005137.2 + 58867 0.68 0.999967
Target:  5'- cGUCGUUGgacGUGCcgcaGCGUUaGGCGAACGu -3'
miRNA:   3'- -UAGUAAUa--CAUG----CGCAAcUUGCUUGC- -5'
22891 5' -44.1 NC_005137.2 + 17506 0.68 0.999955
Target:  5'- aAUCGUguUcgGUGCGCGUU-AACGAggGCGc -3'
miRNA:   3'- -UAGUA--AuaCAUGCGCAAcUUGCU--UGC- -5'
22891 5' -44.1 NC_005137.2 + 102765 0.68 0.999955
Target:  5'- -aCGUgcgGUGCGUGUUGGGCGuuCGc -3'
miRNA:   3'- uaGUAauaCAUGCGCAACUUGCuuGC- -5'
22891 5' -44.1 NC_005137.2 + 106688 0.69 0.999892
Target:  5'- --uGUUGUGUGCGCGgac-GCGGugGa -3'
miRNA:   3'- uagUAAUACAUGCGCaacuUGCUugC- -5'
22891 5' -44.1 NC_005137.2 + 123200 0.69 0.999814
Target:  5'- cGUCGUU-UGUgGCGuCGUUGAGCGAcCGu -3'
miRNA:   3'- -UAGUAAuACA-UGC-GCAACUUGCUuGC- -5'
22891 5' -44.1 NC_005137.2 + 67696 0.69 0.999759
Target:  5'- -aCAUUGUaGUgagggcGCGCGUUGugcccGCGAGCGa -3'
miRNA:   3'- uaGUAAUA-CA------UGCGCAACu----UGCUUGC- -5'
22891 5' -44.1 NC_005137.2 + 105471 0.7 0.999641
Target:  5'- ----aUGUGUugauuuuguuuaaucGCGCGUUGcAACGAGCGu -3'
miRNA:   3'- uaguaAUACA---------------UGCGCAAC-UUGCUUGC- -5'
22891 5' -44.1 NC_005137.2 + 72080 0.72 0.997835
Target:  5'- gAUUAUUuaGUGUGCGCGUUucuGGCGAACc -3'
miRNA:   3'- -UAGUAA--UACAUGCGCAAc--UUGCUUGc -5'
22891 5' -44.1 NC_005137.2 + 46473 1.1 0.035293
Target:  5'- cAUCAUUAUGUACGCGUUGAACGAACGg -3'
miRNA:   3'- -UAGUAAUACAUGCGCAACUUGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.