miRNA display CGI

Results 1 - 10 of 10 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
22892	3'	-59.1	NC_005137.2	+	63659	0.66	0.759899
	Target:  5'- cGcGUCGcGCCC-GCGGUCACcgaacccgACGCGu -3' miRNA:   3'- aC-CGGCaCGGGaCGCCAGUGa-------UGUGC- -5'
22892	3'	-59.1	NC_005137.2	+	75247	0.66	0.740812
	Target:  5'- aUGGCCGUGaCC-GCGGgCGCUugAa- -3' miRNA:   3'- -ACCGGCACgGGaCGCCaGUGAugUgc -5'
22892	3'	-59.1	NC_005137.2	+	7302	0.66	0.721352
	Target:  5'- cGGUCGcuuUGCCCgggcaggaUGCGGUCAaagUGCugGc -3' miRNA:   3'- aCCGGC---ACGGG--------ACGCCAGUg--AUGugC- -5'
22892	3'	-59.1	NC_005137.2	+	34065	0.68	0.600703
	Target:  5'- cGGCCGUgucguaucuGCCUUGCGGccauucgugUUugUGCACc -3' miRNA:   3'- aCCGGCA---------CGGGACGCC---------AGugAUGUGc -5'
22892	3'	-59.1	NC_005137.2	+	66681	0.69	0.580557
	Target:  5'- uUGGCCuGUGCCCU-CGGgcaaauuggCGCaGCGCGc -3' miRNA:   3'- -ACCGG-CACGGGAcGCCa--------GUGaUGUGC- -5'
22892	3'	-59.1	NC_005137.2	+	119209	0.69	0.574539
	Target:  5'- cGGCgacuugCGUGCCCaucguguacaacccuUGCGGUaauggcugCACUGCGCGc -3' miRNA:   3'- aCCG------GCACGGG---------------ACGCCA--------GUGAUGUGC- -5'
22892	3'	-59.1	NC_005137.2	+	12852	0.69	0.569535
	Target:  5'- aGGCCGUaGCCCgGCgcaaucuGGaUCACggGCGCGg -3' miRNA:   3'- aCCGGCA-CGGGaCG-------CC-AGUGa-UGUGC- -5'
22892	3'	-59.1	NC_005137.2	+	100533	0.7	0.521182
	Target:  5'- cGGCCGUGCCCgaaaGacgaGGUCggaGCUaACGCa -3' miRNA:   3'- aCCGGCACGGGa---Cg---CCAG---UGA-UGUGc -5'
22892	3'	-59.1	NC_005137.2	+	31199	0.71	0.463398
	Target:  5'- cGGCCcgcGUcGCCCUuguaccaGCGGUCGCgGCACa -3' miRNA:   3'- aCCGG---CA-CGGGA-------CGCCAGUGaUGUGc -5'
22892	3'	-59.1	NC_005137.2	+	45500	1.08	0.001536
	Target:  5'- gUGGCCGUGCCCUGCGGUCACUACACGc -3' miRNA:   3'- -ACCGGCACGGGACGCCAGUGAUGUGC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home