Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22892 | 5' | -52.5 | NC_005137.2 | + | 55298 | 0.66 | 0.965886 |
Target: 5'- cCGCGUcGCaAGCcguuUCGuuuACUGGAUGGCAg -3' miRNA: 3'- -GUGCA-CG-UCGuu--AGC---UGACUUGCCGU- -5' |
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22892 | 5' | -52.5 | NC_005137.2 | + | 125057 | 0.66 | 0.965886 |
Target: 5'- gGCGgcGCGGCGccgGAuCUGAACGGCGc -3' miRNA: 3'- gUGCa-CGUCGUuagCU-GACUUGCCGU- -5' |
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22892 | 5' | -52.5 | NC_005137.2 | + | 48895 | 0.66 | 0.962435 |
Target: 5'- cCGCGcUGCGGCu-UCGcCUGAG-GGCAc -3' miRNA: 3'- -GUGC-ACGUCGuuAGCuGACUUgCCGU- -5' |
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22892 | 5' | -52.5 | NC_005137.2 | + | 106679 | 0.66 | 0.962435 |
Target: 5'- gGCGUGCAGU-GUUGugUGcGCGGaCGc -3' miRNA: 3'- gUGCACGUCGuUAGCugACuUGCC-GU- -5' |
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22892 | 5' | -52.5 | NC_005137.2 | + | 63435 | 0.67 | 0.954821 |
Target: 5'- aACGauUGCAGguGUUGACUGAAUauGCAa -3' miRNA: 3'- gUGC--ACGUCguUAGCUGACUUGc-CGU- -5' |
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22892 | 5' | -52.5 | NC_005137.2 | + | 26563 | 0.68 | 0.905523 |
Target: 5'- gGCGcUGCGGCGuGUCGACUGccaagauguacacGCGGCu -3' miRNA: 3'- gUGC-ACGUCGU-UAGCUGACu------------UGCCGu -5' |
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22892 | 5' | -52.5 | NC_005137.2 | + | 21476 | 0.69 | 0.880679 |
Target: 5'- gUugGUGCAGCA--CGAC-GAGCaGCAa -3' miRNA: 3'- -GugCACGUCGUuaGCUGaCUUGcCGU- -5' |
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22892 | 5' | -52.5 | NC_005137.2 | + | 20870 | 0.7 | 0.857603 |
Target: 5'- gCACGcauuaaaauUGCGGCuuUUGAcCUGGAUGGCAc -3' miRNA: 3'- -GUGC---------ACGUCGuuAGCU-GACUUGCCGU- -5' |
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22892 | 5' | -52.5 | NC_005137.2 | + | 34606 | 0.7 | 0.857603 |
Target: 5'- gCGCGgGUAGCGGUCGGC---GCGGCu -3' miRNA: 3'- -GUGCaCGUCGUUAGCUGacuUGCCGu -5' |
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22892 | 5' | -52.5 | NC_005137.2 | + | 119787 | 0.7 | 0.849461 |
Target: 5'- aACGUGUuuuaucGGCGA-CGGCcgGAGCGGCGc -3' miRNA: 3'- gUGCACG------UCGUUaGCUGa-CUUGCCGU- -5' |
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22892 | 5' | -52.5 | NC_005137.2 | + | 103601 | 0.7 | 0.841105 |
Target: 5'- aGCGcUGCAGCGGccgcuacuuUUGGCcGGACGGCGu -3' miRNA: 3'- gUGC-ACGUCGUU---------AGCUGaCUUGCCGU- -5' |
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22892 | 5' | -52.5 | NC_005137.2 | + | 26681 | 0.7 | 0.832544 |
Target: 5'- gCACGUGCGaacGUuuGAUgGcGCUGAACGGCGg -3' miRNA: 3'- -GUGCACGU---CG--UUAgC-UGACUUGCCGU- -5' |
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22892 | 5' | -52.5 | NC_005137.2 | + | 93575 | 0.71 | 0.786958 |
Target: 5'- gCGCG-GCGGCAAUCacGCUGAuccaaacgcGCGGCGc -3' miRNA: 3'- -GUGCaCGUCGUUAGc-UGACU---------UGCCGU- -5' |
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22892 | 5' | -52.5 | NC_005137.2 | + | 114447 | 0.72 | 0.767601 |
Target: 5'- aCACGuUGCGGUAA-CGAUUGAGCuGCAc -3' miRNA: 3'- -GUGC-ACGUCGUUaGCUGACUUGcCGU- -5' |
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22892 | 5' | -52.5 | NC_005137.2 | + | 87172 | 0.72 | 0.767601 |
Target: 5'- gCACGUGCAaaucGCGuUCGACgggcgcGGGCGGCu -3' miRNA: 3'- -GUGCACGU----CGUuAGCUGa-----CUUGCCGu -5' |
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22892 | 5' | -52.5 | NC_005137.2 | + | 112223 | 0.73 | 0.664645 |
Target: 5'- aACGUGCGcGCAGUgaUGAUUGAacGCGGCGu -3' miRNA: 3'- gUGCACGU-CGUUA--GCUGACU--UGCCGU- -5' |
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22892 | 5' | -52.5 | NC_005137.2 | + | 45534 | 1.09 | 0.005151 |
Target: 5'- uCACGUGCAGCAAUCGACUGAACGGCAa -3' miRNA: 3'- -GUGCACGUCGUUAGCUGACUUGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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