Results 41 - 43 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22893 | 3' | -59.8 | NC_005137.2 | + | 130382 | 0.68 | 0.580892 |
Target: 5'- -gCGCAACC-CGUGgaacCGCCUuCGGACc -3' miRNA: 3'- agGCGUUGGuGCGCa---GCGGGuGCCUG- -5' |
|||||||
22893 | 3' | -59.8 | NC_005137.2 | + | 99964 | 0.69 | 0.541511 |
Target: 5'- gCCGCGGCCGCGCGccucuucgugCGCCagcaGCGcACg -3' miRNA: 3'- aGGCGUUGGUGCGCa---------GCGGg---UGCcUG- -5' |
|||||||
22893 | 3' | -59.8 | NC_005137.2 | + | 95642 | 0.77 | 0.18548 |
Target: 5'- uUCCGCGugCGC-CGUgCGCCgACGGGCa -3' miRNA: 3'- -AGGCGUugGUGcGCA-GCGGgUGCCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home