miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22894 3' -55 NC_005137.2 + 9606 0.65 0.910956
Target:  5'- aGCAUGCAGcGUCGCUUGCaagcgUgCACgCAa -3'
miRNA:   3'- -CGUGCGUU-CGGCGAACGa----AgGUG-GUg -5'
22894 3' -55 NC_005137.2 + 15262 0.65 0.910956
Target:  5'- gGCGCGCAcGuuGCgUUGCaccuuggcgUCCACUAg -3'
miRNA:   3'- -CGUGCGUuCggCG-AACGa--------AGGUGGUg -5'
22894 3' -55 NC_005137.2 + 24216 0.65 0.909718
Target:  5'- uGCugGCAAGCCuccccauGCUgacaauacuacugUGCU--CGCCGCa -3'
miRNA:   3'- -CGugCGUUCGG-------CGA-------------ACGAagGUGGUG- -5'
22894 3' -55 NC_005137.2 + 104833 0.66 0.904666
Target:  5'- aUAgGCAGGCU-CUUGa-UCCGCCACg -3'
miRNA:   3'- cGUgCGUUCGGcGAACgaAGGUGGUG- -5'
22894 3' -55 NC_005137.2 + 52282 0.66 0.904666
Target:  5'- cCGCGCAcuuaucgccgaAGCCGCa-GCcgUUCUGCCACc -3'
miRNA:   3'- cGUGCGU-----------UCGGCGaaCG--AAGGUGGUG- -5'
22894 3' -55 NC_005137.2 + 34581 0.66 0.904666
Target:  5'- -aACGCAAcGCgGCggGCgcgUCGCCGCg -3'
miRNA:   3'- cgUGCGUU-CGgCGaaCGaa-GGUGGUG- -5'
22894 3' -55 NC_005137.2 + 86281 0.66 0.898127
Target:  5'- -aACGCAAGCUGCUaaacuuggaaGCgg-CACCACa -3'
miRNA:   3'- cgUGCGUUCGGCGAa---------CGaagGUGGUG- -5'
22894 3' -55 NC_005137.2 + 53574 0.66 0.898127
Target:  5'- uGCGCGCGucuGGCUGCguacuugUGCUguggUCCuACgGCa -3'
miRNA:   3'- -CGUGCGU---UCGGCGa------ACGA----AGG-UGgUG- -5'
22894 3' -55 NC_005137.2 + 91209 0.66 0.898127
Target:  5'- uGCACGCGuguuGGCCGCcaUUGUcagcagUgUGCCACg -3'
miRNA:   3'- -CGUGCGU----UCGGCG--AACGa-----AgGUGGUG- -5'
22894 3' -55 NC_005137.2 + 20973 0.66 0.898127
Target:  5'- gGCGCGCGuuuuGCCGC--GCUUgCACgCAa -3'
miRNA:   3'- -CGUGCGUu---CGGCGaaCGAAgGUG-GUg -5'
22894 3' -55 NC_005137.2 + 70583 0.66 0.894086
Target:  5'- ---aGCAAGuacauguuucccaaaCCGUUUGCgcCCACCACa -3'
miRNA:   3'- cgugCGUUC---------------GGCGAACGaaGGUGGUG- -5'
22894 3' -55 NC_005137.2 + 19824 0.66 0.891344
Target:  5'- cGCcaaGCAAcGCCGCgacacaaaGCcUCCGCCGCc -3'
miRNA:   3'- -CGug-CGUU-CGGCGaa------CGaAGGUGGUG- -5'
22894 3' -55 NC_005137.2 + 22853 0.66 0.891344
Target:  5'- cGCGCGCAuaCCGac-GCcgCCGCCGCc -3'
miRNA:   3'- -CGUGCGUucGGCgaaCGaaGGUGGUG- -5'
22894 3' -55 NC_005137.2 + 79710 0.66 0.891344
Target:  5'- -gGCGCAcucguuauGCCGC-UGC--CCGCCGCa -3'
miRNA:   3'- cgUGCGUu-------CGGCGaACGaaGGUGGUG- -5'
22894 3' -55 NC_005137.2 + 99818 0.66 0.890652
Target:  5'- gGCgACGCGGGCCGgUUGCg-CCguauauuacaacaGCCAUg -3'
miRNA:   3'- -CG-UGCGUUCGGCgAACGaaGG-------------UGGUG- -5'
22894 3' -55 NC_005137.2 + 128550 0.66 0.889262
Target:  5'- aGCGCGCGauagaguggucgucGGgCGCggGCacgucggCCACCGCg -3'
miRNA:   3'- -CGUGCGU--------------UCgGCGaaCGaa-----GGUGGUG- -5'
22894 3' -55 NC_005137.2 + 68697 0.66 0.88432
Target:  5'- gGCGCcuGCGAGacauCCGUUUGCacCCACCAg -3'
miRNA:   3'- -CGUG--CGUUC----GGCGAACGaaGGUGGUg -5'
22894 3' -55 NC_005137.2 + 67083 0.66 0.877059
Target:  5'- uCGCGCA--CCGCgUGCgaaccgUCCGCCAa -3'
miRNA:   3'- cGUGCGUucGGCGaACGa-----AGGUGGUg -5'
22894 3' -55 NC_005137.2 + 88024 0.67 0.869567
Target:  5'- -gGCGCGGccaccGCCGag-GCgggCCACCACg -3'
miRNA:   3'- cgUGCGUU-----CGGCgaaCGaa-GGUGGUG- -5'
22894 3' -55 NC_005137.2 + 119713 0.67 0.869567
Target:  5'- cGUACGCAucccGCCGCgcaGCgcCCAUgGCa -3'
miRNA:   3'- -CGUGCGUu---CGGCGaa-CGaaGGUGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.