miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22895 3' -56.8 NC_005137.2 + 76533 0.66 0.832175
Target:  5'- --gUCGGCAguuugacgcuaauugAGCAuuuuGCCggacuuaaaaacaACACGCCCGa -3'
miRNA:   3'- caaAGCCGU---------------UCGU----CGG-------------UGUGCGGGCa -5'
22895 3' -56.8 NC_005137.2 + 119797 0.66 0.829627
Target:  5'- --aUCGGCGA-CGGCCggaGCGgCGCCCa- -3'
miRNA:   3'- caaAGCCGUUcGUCGG---UGU-GCGGGca -5'
22895 3' -56.8 NC_005137.2 + 35506 0.66 0.812225
Target:  5'- ---cCGGCcacGuCAGCgAUGCGCCCGUg -3'
miRNA:   3'- caaaGCCGuu-C-GUCGgUGUGCGGGCA- -5'
22895 3' -56.8 NC_005137.2 + 20467 0.66 0.803266
Target:  5'- --aUCGGCGGGCA-CCuccaACGCCUGc -3'
miRNA:   3'- caaAGCCGUUCGUcGGug--UGCGGGCa -5'
22895 3' -56.8 NC_005137.2 + 37101 0.67 0.784878
Target:  5'- ---aCGGCAaacauGGCGGCaUACGCGCCUc- -3'
miRNA:   3'- caaaGCCGU-----UCGUCG-GUGUGCGGGca -5'
22895 3' -56.8 NC_005137.2 + 96007 0.67 0.784878
Target:  5'- --aUCGGCAuGCAgGCCgu-UGCCCGUc -3'
miRNA:   3'- caaAGCCGUuCGU-CGGuguGCGGGCA- -5'
22895 3' -56.8 NC_005137.2 + 7157 0.67 0.765924
Target:  5'- ---gCGGCGuGUaAGCCGCGCGCUCa- -3'
miRNA:   3'- caaaGCCGUuCG-UCGGUGUGCGGGca -5'
22895 3' -56.8 NC_005137.2 + 130857 0.68 0.72662
Target:  5'- --gUUGGaCGcGCAGCC-CGCGCCUGa -3'
miRNA:   3'- caaAGCC-GUuCGUCGGuGUGCGGGCa -5'
22895 3' -56.8 NC_005137.2 + 109768 0.68 0.72662
Target:  5'- cGUUUUGGUGacAGCGGCCcgcaGCGuCGCCCa- -3'
miRNA:   3'- -CAAAGCCGU--UCGUCGG----UGU-GCGGGca -5'
22895 3' -56.8 NC_005137.2 + 108562 0.68 0.706425
Target:  5'- ---gCGGCAAauguacgugauCGGCgGCGCGCCCGUg -3'
miRNA:   3'- caaaGCCGUUc----------GUCGgUGUGCGGGCA- -5'
22895 3' -56.8 NC_005137.2 + 45014 0.68 0.702352
Target:  5'- --cUCGGCcggcGCGGCCACAaauaucuuuacggGCCCGUc -3'
miRNA:   3'- caaAGCCGuu--CGUCGGUGUg------------CGGGCA- -5'
22895 3' -56.8 NC_005137.2 + 108153 0.68 0.696225
Target:  5'- ---gCGGC-GGCGGCgucgguaugCGCGCGCCCGc -3'
miRNA:   3'- caaaGCCGuUCGUCG---------GUGUGCGGGCa -5'
22895 3' -56.8 NC_005137.2 + 118123 0.68 0.696225
Target:  5'- -gUUCGGCcaccuGUuucGCCcCGCGCCCGUg -3'
miRNA:   3'- caAAGCCGuu---CGu--CGGuGUGCGGGCA- -5'
22895 3' -56.8 NC_005137.2 + 74351 0.69 0.68597
Target:  5'- --gUCGGCAAGCacgaGGUCGCACGCg--- -3'
miRNA:   3'- caaAGCCGUUCG----UCGGUGUGCGggca -5'
22895 3' -56.8 NC_005137.2 + 80373 0.69 0.675669
Target:  5'- ---gCGGCAAGguGCUGCAgcCCCGUg -3'
miRNA:   3'- caaaGCCGUUCguCGGUGUgcGGGCA- -5'
22895 3' -56.8 NC_005137.2 + 754 0.69 0.665331
Target:  5'- ---gCGGCGguGGCGGCgGCACGUuuGg -3'
miRNA:   3'- caaaGCCGU--UCGUCGgUGUGCGggCa -5'
22895 3' -56.8 NC_005137.2 + 119932 0.7 0.623791
Target:  5'- uGUUUCaguuGCAaguuGGCAGCCACACGCgCa- -3'
miRNA:   3'- -CAAAGc---CGU----UCGUCGGUGUGCGgGca -5'
22895 3' -56.8 NC_005137.2 + 30947 0.7 0.623791
Target:  5'- ---gCGGCAcaaAGCAugcugaacgcGCCGCGCGCCgCGUc -3'
miRNA:   3'- caaaGCCGU---UCGU----------CGGUGUGCGG-GCA- -5'
22895 3' -56.8 NC_005137.2 + 122370 0.7 0.613401
Target:  5'- ---cCGGCcaauAGCAcGCC-CACGCCCGc -3'
miRNA:   3'- caaaGCCGu---UCGU-CGGuGUGCGGGCa -5'
22895 3' -56.8 NC_005137.2 + 11152 0.7 0.603026
Target:  5'- --gUUGGCugcGCGuGCCAcCACGCCCGa -3'
miRNA:   3'- caaAGCCGuu-CGU-CGGU-GUGCGGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.