miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22895 3' -56.8 NC_005137.2 + 35631 1.08 0.00212
Target:  5'- cGUUUCGGCAAGCAGCCACACGCCCGUa -3'
miRNA:   3'- -CAAAGCCGUUCGUCGGUGUGCGGGCA- -5'
22895 3' -56.8 NC_005137.2 + 43813 0.82 0.11681
Target:  5'- ---aCGGCAcgAGCAGCCGCccGCGCCCGUc -3'
miRNA:   3'- caaaGCCGU--UCGUCGGUG--UGCGGGCA- -5'
22895 3' -56.8 NC_005137.2 + 33013 0.81 0.151528
Target:  5'- --cUUGGCGGGCGcacccacGCCGCGCGCCCGUu -3'
miRNA:   3'- caaAGCCGUUCGU-------CGGUGUGCGGGCA- -5'
22895 3' -56.8 NC_005137.2 + 37531 0.73 0.408432
Target:  5'- uGUUUCGGCAaacGGCgcuGGCgCGCACcguGCCCGUa -3'
miRNA:   3'- -CAAAGCCGU---UCG---UCG-GUGUG---CGGGCA- -5'
22895 3' -56.8 NC_005137.2 + 99961 0.73 0.453739
Target:  5'- ---aCGGCc-GCGGCCGCGCGCCUc- -3'
miRNA:   3'- caaaGCCGuuCGUCGGUGUGCGGGca -5'
22895 3' -56.8 NC_005137.2 + 112687 0.71 0.52142
Target:  5'- aUUUUGGCGuccguGCAGUCGCgAUGCCCGc -3'
miRNA:   3'- cAAAGCCGUu----CGUCGGUG-UGCGGGCa -5'
22895 3' -56.8 NC_005137.2 + 120836 0.71 0.531423
Target:  5'- ---gCGGCGAGCaAGCCAUACGaCUGUu -3'
miRNA:   3'- caaaGCCGUUCG-UCGGUGUGCgGGCA- -5'
22895 3' -56.8 NC_005137.2 + 98448 0.7 0.592673
Target:  5'- ----aGcGCAAGCAGCCgcguGCACGgCCGUa -3'
miRNA:   3'- caaagC-CGUUCGUCGG----UGUGCgGGCA- -5'
22895 3' -56.8 NC_005137.2 + 11152 0.7 0.603026
Target:  5'- --gUUGGCugcGCGuGCCAcCACGCCCGa -3'
miRNA:   3'- caaAGCCGuu-CGU-CGGU-GUGCGGGCa -5'
22895 3' -56.8 NC_005137.2 + 122370 0.7 0.613401
Target:  5'- ---cCGGCcaauAGCAcGCC-CACGCCCGc -3'
miRNA:   3'- caaaGCCGu---UCGU-CGGuGUGCGGGCa -5'
22895 3' -56.8 NC_005137.2 + 30947 0.7 0.623791
Target:  5'- ---gCGGCAcaaAGCAugcugaacgcGCCGCGCGCCgCGUc -3'
miRNA:   3'- caaaGCCGU---UCGU----------CGGUGUGCGG-GCA- -5'
22895 3' -56.8 NC_005137.2 + 119932 0.7 0.623791
Target:  5'- uGUUUCaguuGCAaguuGGCAGCCACACGCgCa- -3'
miRNA:   3'- -CAAAGc---CGU----UCGUCGGUGUGCGgGca -5'
22895 3' -56.8 NC_005137.2 + 754 0.69 0.665331
Target:  5'- ---gCGGCGguGGCGGCgGCACGUuuGg -3'
miRNA:   3'- caaaGCCGU--UCGUCGgUGUGCGggCa -5'
22895 3' -56.8 NC_005137.2 + 80373 0.69 0.675669
Target:  5'- ---gCGGCAAGguGCUGCAgcCCCGUg -3'
miRNA:   3'- caaaGCCGUUCguCGGUGUgcGGGCA- -5'
22895 3' -56.8 NC_005137.2 + 74351 0.69 0.68597
Target:  5'- --gUCGGCAAGCacgaGGUCGCACGCg--- -3'
miRNA:   3'- caaAGCCGUUCG----UCGGUGUGCGggca -5'
22895 3' -56.8 NC_005137.2 + 108153 0.68 0.696225
Target:  5'- ---gCGGC-GGCGGCgucgguaugCGCGCGCCCGc -3'
miRNA:   3'- caaaGCCGuUCGUCG---------GUGUGCGGGCa -5'
22895 3' -56.8 NC_005137.2 + 118123 0.68 0.696225
Target:  5'- -gUUCGGCcaccuGUuucGCCcCGCGCCCGUg -3'
miRNA:   3'- caAAGCCGuu---CGu--CGGuGUGCGGGCA- -5'
22895 3' -56.8 NC_005137.2 + 45014 0.68 0.702352
Target:  5'- --cUCGGCcggcGCGGCCACAaauaucuuuacggGCCCGUc -3'
miRNA:   3'- caaAGCCGuu--CGUCGGUGUg------------CGGGCA- -5'
22895 3' -56.8 NC_005137.2 + 108562 0.68 0.706425
Target:  5'- ---gCGGCAAauguacgugauCGGCgGCGCGCCCGUg -3'
miRNA:   3'- caaaGCCGUUc----------GUCGgUGUGCGGGCA- -5'
22895 3' -56.8 NC_005137.2 + 130857 0.68 0.72662
Target:  5'- --gUUGGaCGcGCAGCC-CGCGCCUGa -3'
miRNA:   3'- caaAGCC-GUuCGUCGGuGUGCGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.