miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22895 5' -55.6 NC_005137.2 + 85545 0.66 0.923708
Target:  5'- cCAUGAcaaacGCGUGCGCGUgcugCGCcGcCCGc -3'
miRNA:   3'- cGUGCU-----UGCACGCGCAa---GCGcCaGGU- -5'
22895 5' -55.6 NC_005137.2 + 60768 0.66 0.918119
Target:  5'- uUugGccCGUGCGCGUUucgccuuugUGCGcGUCCGa -3'
miRNA:   3'- cGugCuuGCACGCGCAA---------GCGC-CAGGU- -5'
22895 5' -55.6 NC_005137.2 + 110672 0.66 0.91465
Target:  5'- -gACGGGCGUGCGCGgagcccaucaaguaUCG-GGUCa- -3'
miRNA:   3'- cgUGCUUGCACGCGCa-------------AGCgCCAGgu -5'
22895 5' -55.6 NC_005137.2 + 153 0.66 0.91229
Target:  5'- gGCGCGGGC-UGCGCGUccaaCGCGuUCUu -3'
miRNA:   3'- -CGUGCUUGcACGCGCAa---GCGCcAGGu -5'
22895 5' -55.6 NC_005137.2 + 18610 0.66 0.91229
Target:  5'- gGCGCGc-CGUGCGCGaUCGCGcaaUCAa -3'
miRNA:   3'- -CGUGCuuGCACGCGCaAGCGCca-GGU- -5'
22895 5' -55.6 NC_005137.2 + 69894 0.66 0.906223
Target:  5'- aCACGAACGcggcguuggUGCGCGUUuuuuaCGCGG-CgCAa -3'
miRNA:   3'- cGUGCUUGC---------ACGCGCAA-----GCGCCaG-GU- -5'
22895 5' -55.6 NC_005137.2 + 13720 0.66 0.899921
Target:  5'- aGCAUGu-CGUuaGCGUUCGCGuGcUCCu -3'
miRNA:   3'- -CGUGCuuGCAcgCGCAAGCGC-C-AGGu -5'
22895 5' -55.6 NC_005137.2 + 78785 0.66 0.899921
Target:  5'- gGCgACGAguauACGUGC-CGUUUGCGGagCGg -3'
miRNA:   3'- -CG-UGCU----UGCACGcGCAAGCGCCagGU- -5'
22895 5' -55.6 NC_005137.2 + 17320 0.66 0.899278
Target:  5'- uGUGCG-ACGUGCGCG-UCGCagauaauGGcgCCAa -3'
miRNA:   3'- -CGUGCuUGCACGCGCaAGCG-------CCa-GGU- -5'
22895 5' -55.6 NC_005137.2 + 115750 0.67 0.872422
Target:  5'- uGCaACGcAACGUGCGCG--CGCGGcguuuUCCc -3'
miRNA:   3'- -CG-UGC-UUGCACGCGCaaGCGCC-----AGGu -5'
22895 5' -55.6 NC_005137.2 + 2078 0.67 0.864996
Target:  5'- -aACGAucACGgGCGCGUUgGCuGUCCu -3'
miRNA:   3'- cgUGCU--UGCaCGCGCAAgCGcCAGGu -5'
22895 5' -55.6 NC_005137.2 + 96476 0.67 0.857359
Target:  5'- cCGCGAACGcaacacggUGCGCG-UCGU-GUCCAc -3'
miRNA:   3'- cGUGCUUGC--------ACGCGCaAGCGcCAGGU- -5'
22895 5' -55.6 NC_005137.2 + 50095 0.67 0.857359
Target:  5'- cCACGGccGCGcaaaUGCGCGUgagCGUGG-CCAu -3'
miRNA:   3'- cGUGCU--UGC----ACGCGCAa--GCGCCaGGU- -5'
22895 5' -55.6 NC_005137.2 + 31706 0.67 0.849518
Target:  5'- cGCACcGACGUGUGCacGUUCGCG-UCg- -3'
miRNA:   3'- -CGUGcUUGCACGCG--CAAGCGCcAGgu -5'
22895 5' -55.6 NC_005137.2 + 95887 0.67 0.849518
Target:  5'- aCACGGGCaugGUGCG-UCGCGGUgaCCGu -3'
miRNA:   3'- cGUGCUUGca-CGCGCaAGCGCCA--GGU- -5'
22895 5' -55.6 NC_005137.2 + 104342 0.68 0.816246
Target:  5'- cGCACGuGCGUGCGUcgucguGUUCGCGcUgCGa -3'
miRNA:   3'- -CGUGCuUGCACGCG------CAAGCGCcAgGU- -5'
22895 5' -55.6 NC_005137.2 + 31041 0.69 0.789506
Target:  5'- cGCACGAagAgGcGCGCGgcCGCGG-CCGu -3'
miRNA:   3'- -CGUGCU--UgCaCGCGCaaGCGCCaGGU- -5'
22895 5' -55.6 NC_005137.2 + 128685 0.69 0.789506
Target:  5'- uGCACGccuccACGaGCGCGUU-GCGGUCgAg -3'
miRNA:   3'- -CGUGCu----UGCaCGCGCAAgCGCCAGgU- -5'
22895 5' -55.6 NC_005137.2 + 100264 0.69 0.780297
Target:  5'- cGCACGGGC--GCGCG-UCGCGGcaUUCAc -3'
miRNA:   3'- -CGUGCUUGcaCGCGCaAGCGCC--AGGU- -5'
22895 5' -55.6 NC_005137.2 + 129014 0.69 0.761487
Target:  5'- uGCACGAGC-UGUGCa--CGCGGUCa- -3'
miRNA:   3'- -CGUGCUUGcACGCGcaaGCGCCAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.