miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22896 3' -58.5 NC_005137.2 + 63971 0.68 0.676084
Target:  5'- aCGCCGCGAUGgGCCAaUGUCgG-GUUa -3'
miRNA:   3'- aGUGGCGCUGCgUGGU-ACGGgCaCAG- -5'
22896 3' -58.5 NC_005137.2 + 123990 0.68 0.676084
Target:  5'- -gGCCGUGACGCGCgugcgccacguUGUGCCCGg--- -3'
miRNA:   3'- agUGGCGCUGCGUG-----------GUACGGGCacag -5'
22896 3' -58.5 NC_005137.2 + 13153 0.68 0.645716
Target:  5'- gUUGCCG-GACGCGuCCGUGCUgGUGg- -3'
miRNA:   3'- -AGUGGCgCUGCGU-GGUACGGgCACag -5'
22896 3' -58.5 NC_005137.2 + 63636 0.69 0.625404
Target:  5'- cCGCCGCGgcgacggucGCGCAUCGcgucgcGCCCGcgGUCa -3'
miRNA:   3'- aGUGGCGC---------UGCGUGGUa-----CGGGCa-CAG- -5'
22896 3' -58.5 NC_005137.2 + 97902 0.69 0.605112
Target:  5'- cCACUGCGACaccaGCACCAccuUGUCguugggCGUGUCa -3'
miRNA:   3'- aGUGGCGCUG----CGUGGU---ACGG------GCACAG- -5'
22896 3' -58.5 NC_005137.2 + 61098 0.69 0.594992
Target:  5'- gCGCCGCGuaaaaaacGCGCACCAacGCCgcguuCGUGUUg -3'
miRNA:   3'- aGUGGCGC--------UGCGUGGUa-CGG-----GCACAG- -5'
22896 3' -58.5 NC_005137.2 + 119316 0.69 0.588932
Target:  5'- aUCACCGCGAucagacacauggaaaCGCcgaaaaugcuGCCAgGCCCGauUGUCu -3'
miRNA:   3'- -AGUGGCGCU---------------GCG----------UGGUaCGGGC--ACAG- -5'
22896 3' -58.5 NC_005137.2 + 110644 0.69 0.574839
Target:  5'- gCGCCGaCGGCGUuugGCuUGUGCCCGUGa- -3'
miRNA:   3'- aGUGGC-GCUGCG---UG-GUACGGGCACag -5'
22896 3' -58.5 NC_005137.2 + 108646 0.7 0.56482
Target:  5'- cUCGCCuGcCGACguGCACCcauUGCuuGUGUCg -3'
miRNA:   3'- -AGUGG-C-GCUG--CGUGGu--ACGggCACAG- -5'
22896 3' -58.5 NC_005137.2 + 8466 0.7 0.56482
Target:  5'- -aAUUGCGACGCGCCGauaacgUGCCCGaUG-Ca -3'
miRNA:   3'- agUGGCGCUGCGUGGU------ACGGGC-ACaG- -5'
22896 3' -58.5 NC_005137.2 + 13442 0.7 0.515534
Target:  5'- gCACCgGCGGCGCACUuUGCCgGUa-- -3'
miRNA:   3'- aGUGG-CGCUGCGUGGuACGGgCAcag -5'
22896 3' -58.5 NC_005137.2 + 24426 0.71 0.477395
Target:  5'- aCACCGCGGCGCcguaaauguccACCAUGUauugaCCGUuGUUa -3'
miRNA:   3'- aGUGGCGCUGCG-----------UGGUACG-----GGCA-CAG- -5'
22896 3' -58.5 NC_005137.2 + 97801 0.71 0.468076
Target:  5'- cUCGCCGCggugcgcucuucGACGCGCaauUGaCCCGUGUa -3'
miRNA:   3'- -AGUGGCG------------CUGCGUGgu-AC-GGGCACAg -5'
22896 3' -58.5 NC_005137.2 + 34674 0.72 0.431781
Target:  5'- cCACCGCaccagcaaGCGCCGUGggguCCCGUGUCc -3'
miRNA:   3'- aGUGGCGcug-----CGUGGUAC----GGGCACAG- -5'
22896 3' -58.5 NC_005137.2 + 21224 0.72 0.422966
Target:  5'- uUUACguggGCGACGCugCggGCCgCGUGUCa -3'
miRNA:   3'- -AGUGg---CGCUGCGugGuaCGG-GCACAG- -5'
22896 3' -58.5 NC_005137.2 + 11325 0.73 0.380566
Target:  5'- gCugUGUGcGCGCGCCGUGCCUGUuUCg -3'
miRNA:   3'- aGugGCGC-UGCGUGGUACGGGCAcAG- -5'
22896 3' -58.5 NC_005137.2 + 44918 0.73 0.380566
Target:  5'- cUCGUCGCGGCGUACCAUGaCgCCGUGc- -3'
miRNA:   3'- -AGUGGCGCUGCGUGGUAC-G-GGCACag -5'
22896 3' -58.5 NC_005137.2 + 30746 0.75 0.304685
Target:  5'- -uGCCGCGACGCGC---GCCCGUG-Cg -3'
miRNA:   3'- agUGGCGCUGCGUGguaCGGGCACaG- -5'
22896 3' -58.5 NC_005137.2 + 37545 0.75 0.290977
Target:  5'- gCGCUgGCG-CGCACCGUGCCCGUa-- -3'
miRNA:   3'- aGUGG-CGCuGCGUGGUACGGGCAcag -5'
22896 3' -58.5 NC_005137.2 + 7955 0.75 0.277756
Target:  5'- gCGCCGCGACcucgACCGgcgGCCCGUGUUc -3'
miRNA:   3'- aGUGGCGCUGcg--UGGUa--CGGGCACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.