Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22896 | 5' | -52 | NC_005137.2 | + | 22430 | 0.67 | 0.950718 |
Target: 5'- gGAGCGucacgucggcgauuUGGGCAACGugcgcUCCGUCGgCUg -3' miRNA: 3'- aUUUGU--------------GCCCGUUGUu----AGGCAGCgGG- -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 103110 | 0.68 | 0.943067 |
Target: 5'- --uGC-CGGGCGAUGAcCCGUgGCgCCg -3' miRNA: 3'- auuUGuGCCCGUUGUUaGGCAgCG-GG- -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 123045 | 0.68 | 0.938224 |
Target: 5'- gGAACACGGGCcgcCGGUCgagGUCGCg- -3' miRNA: 3'- aUUUGUGCCCGuu-GUUAGg--CAGCGgg -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 14102 | 0.68 | 0.938224 |
Target: 5'- cAAGCgaaACGGGUGACGG-CCGUUGUCa -3' miRNA: 3'- aUUUG---UGCCCGUUGUUaGGCAGCGGg -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 43814 | 0.68 | 0.933124 |
Target: 5'- -cGGCACGaGCAGCcgcCCG-CGCCCg -3' miRNA: 3'- auUUGUGCcCGUUGuuaGGCaGCGGG- -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 22640 | 0.68 | 0.927768 |
Target: 5'- ----gACGGGUAcccACGAaCCGUCGgCCa -3' miRNA: 3'- auuugUGCCCGU---UGUUaGGCAGCgGG- -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 96025 | 0.68 | 0.927768 |
Target: 5'- cGGACAUGGuGUuuCAAgccaCCGcCGCCCa -3' miRNA: 3'- aUUUGUGCC-CGuuGUUa---GGCaGCGGG- -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 6872 | 0.68 | 0.927768 |
Target: 5'- --cGCugGGGCAcaGCAGUuuGUUGUUUg -3' miRNA: 3'- auuUGugCCCGU--UGUUAggCAGCGGG- -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 74765 | 0.68 | 0.927768 |
Target: 5'- --uGCGCGGuGCGGC-AUCaCGUC-CCCa -3' miRNA: 3'- auuUGUGCC-CGUUGuUAG-GCAGcGGG- -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 43173 | 0.69 | 0.91628 |
Target: 5'- aAAACuuGGGCAAauuguUCCGUuuguccCGCCCu -3' miRNA: 3'- aUUUGugCCCGUUguu--AGGCA------GCGGG- -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 61101 | 0.69 | 0.910151 |
Target: 5'- --uGCGUGGcGCAuugGCGGUCCGaUUGCCCg -3' miRNA: 3'- auuUGUGCC-CGU---UGUUAGGC-AGCGGG- -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 31186 | 0.69 | 0.910151 |
Target: 5'- --uAUACGGcGCAACcggCCcgcGUCGCCCu -3' miRNA: 3'- auuUGUGCC-CGUUGuuaGG---CAGCGGG- -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 24321 | 0.69 | 0.910151 |
Target: 5'- gUGGugGCGGGC-ACGG-CCGUUGUCg -3' miRNA: 3'- -AUUugUGCCCGuUGUUaGGCAGCGGg -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 33016 | 0.69 | 0.903767 |
Target: 5'- ----gGCGGGCGcaccCAcgCCGcgCGCCCg -3' miRNA: 3'- auuugUGCCCGUu---GUuaGGCa-GCGGG- -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 8722 | 0.7 | 0.885996 |
Target: 5'- -cAACACGGGCGGCAgcuauuacguacgcgGUUCGUCGg-- -3' miRNA: 3'- auUUGUGCCCGUUGU---------------UAGGCAGCggg -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 76499 | 0.7 | 0.885996 |
Target: 5'- -uGACACGGGCGucuauucaacggcguGCAcuUCCGUCGgCa -3' miRNA: 3'- auUUGUGCCCGU---------------UGUu-AGGCAGCgGg -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 44902 | 0.7 | 0.883115 |
Target: 5'- aUAAACACGGGCuuu--UCuCGUCGCg- -3' miRNA: 3'- -AUUUGUGCCCGuuguuAG-GCAGCGgg -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 22843 | 0.7 | 0.858711 |
Target: 5'- cGAGgGCGGGCGcgcGCAuaccgacgccgCCGcCGCCCg -3' miRNA: 3'- aUUUgUGCCCGU---UGUua---------GGCaGCGGG- -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 34605 | 0.7 | 0.852248 |
Target: 5'- --cGCGCGGGUAGCGGUCgG-CGCg- -3' miRNA: 3'- auuUGUGCCCGUUGUUAGgCaGCGgg -5' |
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22896 | 5' | -52 | NC_005137.2 | + | 41974 | 0.71 | 0.826818 |
Target: 5'- cGAACACGauuacagcGGCAAUAG-CCaGUCGCCUa -3' miRNA: 3'- aUUUGUGC--------CCGUUGUUaGG-CAGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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