miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22897 5' -54 NC_005137.2 + 18568 0.66 0.946111
Target:  5'- cGCCGCGuc-CAACGGCCgacuccaaCGCCGu- -3'
miRNA:   3'- -CGGUGUuacGUUGCCGGaa------GCGGUcc -5'
22897 5' -54 NC_005137.2 + 55551 0.66 0.93158
Target:  5'- gGCCAaCAAUGCcACGGCCacgugcaagUUgGCCGc- -3'
miRNA:   3'- -CGGU-GUUACGuUGCCGG---------AAgCGGUcc -5'
22897 5' -54 NC_005137.2 + 98849 0.67 0.926239
Target:  5'- aCCGCAuacAUGCuGACGGCUaUUGUguGGg -3'
miRNA:   3'- cGGUGU---UACG-UUGCCGGaAGCGguCC- -5'
22897 5' -54 NC_005137.2 + 12819 0.67 0.926239
Target:  5'- cCCACAGcGcCAACGGCgucaaaguUUUCGgCCAGGc -3'
miRNA:   3'- cGGUGUUaC-GUUGCCG--------GAAGC-GGUCC- -5'
22897 5' -54 NC_005137.2 + 48893 0.67 0.926239
Target:  5'- cGCCGC---GCuGCGG-CUUCGCCugAGGg -3'
miRNA:   3'- -CGGUGuuaCGuUGCCgGAAGCGG--UCC- -5'
22897 5' -54 NC_005137.2 + 96419 0.67 0.920649
Target:  5'- cCCGCGcgGCGACGcGCCcgccgcguugcgUUUGCgCGGGu -3'
miRNA:   3'- cGGUGUuaCGUUGC-CGG------------AAGCG-GUCC- -5'
22897 5' -54 NC_005137.2 + 34582 0.67 0.920649
Target:  5'- -aCGCAAcGCGGCGGgCgcgUCGCCGcgcGGg -3'
miRNA:   3'- cgGUGUUaCGUUGCCgGa--AGCGGU---CC- -5'
22897 5' -54 NC_005137.2 + 21628 0.67 0.908722
Target:  5'- gGCUGCAGUGUGACGGUgg-CGaCGGGa -3'
miRNA:   3'- -CGGUGUUACGUUGCCGgaaGCgGUCC- -5'
22897 5' -54 NC_005137.2 + 812 0.67 0.908722
Target:  5'- cGCUACAGgugGCGGCGGCacgUUUacaCCAGGu -3'
miRNA:   3'- -CGGUGUUa--CGUUGCCGg--AAGc--GGUCC- -5'
22897 5' -54 NC_005137.2 + 28072 0.67 0.894468
Target:  5'- cGCCAgAcgGCuguacacgcagcGCGGCCU--GCCGGGu -3'
miRNA:   3'- -CGGUgUuaCGu-----------UGCCGGAagCGGUCC- -5'
22897 5' -54 NC_005137.2 + 19495 0.68 0.881942
Target:  5'- aGCCGCucUGCGuccacuucuucaACGGaaaCggCGCCAGGc -3'
miRNA:   3'- -CGGUGuuACGU------------UGCCg--GaaGCGGUCC- -5'
22897 5' -54 NC_005137.2 + 122692 0.68 0.881942
Target:  5'- aGCC-CGGcucGUAACGGCCgUUGCCAaGGu -3'
miRNA:   3'- -CGGuGUUa--CGUUGCCGGaAGCGGU-CC- -5'
22897 5' -54 NC_005137.2 + 13438 0.69 0.851469
Target:  5'- aGCCGCAccgGCGGC-GCaCUUUGCCGGu -3'
miRNA:   3'- -CGGUGUua-CGUUGcCG-GAAGCGGUCc -5'
22897 5' -54 NC_005137.2 + 129004 0.69 0.817685
Target:  5'- cGCCGCAgcGUGCAcgagcugugcacGCGGUCaaCGaCCGGGu -3'
miRNA:   3'- -CGGUGU--UACGU------------UGCCGGaaGC-GGUCC- -5'
22897 5' -54 NC_005137.2 + 34996 0.69 0.817685
Target:  5'- gGCgACGG-GCAACGGCCUgcaUGCCGa- -3'
miRNA:   3'- -CGgUGUUaCGUUGCCGGAa--GCGGUcc -5'
22897 5' -54 NC_005137.2 + 103595 0.69 0.816802
Target:  5'- uGUUACAGcgcUGCAGCGGCCgcuacuuUUgGCCGGa -3'
miRNA:   3'- -CGGUGUU---ACGUUGCCGG-------AAgCGGUCc -5'
22897 5' -54 NC_005137.2 + 93673 0.7 0.761922
Target:  5'- gGCCGCGuagaugcGCAACaGGCCcagCGCCGGa -3'
miRNA:   3'- -CGGUGUua-----CGUUG-CCGGaa-GCGGUCc -5'
22897 5' -54 NC_005137.2 + 31806 0.71 0.742271
Target:  5'- cGCaGCGAUGCGGCGGCCcaaUGCCGc- -3'
miRNA:   3'- -CGgUGUUACGUUGCCGGaa-GCGGUcc -5'
22897 5' -54 NC_005137.2 + 8300 0.71 0.73229
Target:  5'- aGCaCGCGuaaccuugGCAACGGCCguuacgaGCCGGGc -3'
miRNA:   3'- -CG-GUGUua------CGUUGCCGGaag----CGGUCC- -5'
22897 5' -54 NC_005137.2 + 127530 0.72 0.691558
Target:  5'- cGCCACAAUGU--CGGCCg-CGCUgAGGu -3'
miRNA:   3'- -CGGUGUUACGuuGCCGGaaGCGG-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.