miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22898 3' -54.1 NC_005137.2 + 96531 0.67 0.913949
Target:  5'- -aCACCGUGuUUGCGUUCcaauuGCGcGUCGg- -3'
miRNA:   3'- gcGUGGCAC-AACGCAAG-----CGC-CAGUaa -5'
22898 3' -54.1 NC_005137.2 + 22539 0.68 0.880726
Target:  5'- aGCGCCGUGUguuugacGCGguacUUGCGGUUu-- -3'
miRNA:   3'- gCGUGGCACAa------CGCa---AGCGCCAGuaa -5'
22898 3' -54.1 NC_005137.2 + 83022 0.69 0.815833
Target:  5'- gCGuCAUUGUGUUGU--UUGCGGUCGUUg -3'
miRNA:   3'- -GC-GUGGCACAACGcaAGCGCCAGUAA- -5'
22898 3' -54.1 NC_005137.2 + 74471 0.71 0.705253
Target:  5'- gCGCACCGUGcguuuguacggcGCGUUUGCGGcCAa- -3'
miRNA:   3'- -GCGUGGCACaa----------CGCAAGCGCCaGUaa -5'
22898 3' -54.1 NC_005137.2 + 35666 0.71 0.69907
Target:  5'- uGCACgaaCGUGc-GCGUUCGCGGUCc-- -3'
miRNA:   3'- gCGUG---GCACaaCGCAAGCGCCAGuaa -5'
22898 3' -54.1 NC_005137.2 + 34534 1.06 0.005413
Target:  5'- gCGCACCGUGUUGCGUUCGCGGUCAUUg -3'
miRNA:   3'- -GCGUGGCACAACGCAAGCGCCAGUAA- -5'
22898 3' -54.1 NC_005137.2 + 11195 0.7 0.739785
Target:  5'- aGCGCUuuUGcaaUGCGUUCGCGGUCGc- -3'
miRNA:   3'- gCGUGGc-ACa--ACGCAAGCGCCAGUaa -5'
22898 3' -54.1 NC_005137.2 + 18561 0.7 0.769318
Target:  5'- cCGCAUCGUGUUGCGacCGCGccguuUCAa- -3'
miRNA:   3'- -GCGUGGCACAACGCaaGCGCc----AGUaa -5'
22898 3' -54.1 NC_005137.2 + 10784 0.7 0.778917
Target:  5'- gGCACCGUGgcGCcUUCGUcGUCGUg -3'
miRNA:   3'- gCGUGGCACaaCGcAAGCGcCAGUAa -5'
22898 3' -54.1 NC_005137.2 + 63653 0.69 0.833273
Target:  5'- gCGCAUCGcGUcGCGccCGCGGUCAc- -3'
miRNA:   3'- -GCGUGGCaCAaCGCaaGCGCCAGUaa -5'
22898 3' -54.1 NC_005137.2 + 31705 0.66 0.930906
Target:  5'- uCGCACCGacgUGUgcaCGUUCGC-GUCGUUu -3'
miRNA:   3'- -GCGUGGC---ACAac-GCAAGCGcCAGUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.