miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22898 5' -54.8 NC_005137.2 + 31219 0.66 0.895187
Target:  5'- -cGACCuCGUGUAcagauugauauaaAGCGCucGCGCGGCc -3'
miRNA:   3'- uuUUGG-GCGCGU-------------UUGCGu-UGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 59633 0.66 0.889015
Target:  5'- cAAACgCCGCGUcgccGACaGuCAACGCGGCc -3'
miRNA:   3'- uUUUG-GGCGCGu---UUG-C-GUUGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 29972 0.66 0.889015
Target:  5'- uAGACCCGCGCAAaauuauuguggGCGUugccauguacGGCcGCGGUu -3'
miRNA:   3'- uUUUGGGCGCGUU-----------UGCG----------UUG-CGCCGc -5'
22898 5' -54.8 NC_005137.2 + 2571 0.66 0.889015
Target:  5'- gAGGugCaGCGCAuuAACGCAG-GUGGCGa -3'
miRNA:   3'- -UUUugGgCGCGU--UUGCGUUgCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 128753 0.66 0.889015
Target:  5'- -cAGCCCGUaaucgcaaagGUAAACGCGAuCGCGcGCc -3'
miRNA:   3'- uuUUGGGCG----------CGUUUGCGUU-GCGC-CGc -5'
22898 5' -54.8 NC_005137.2 + 118023 0.67 0.881932
Target:  5'- uAAACCCGU-UAAAUGCGACGauGCGu -3'
miRNA:   3'- uUUUGGGCGcGUUUGCGUUGCgcCGC- -5'
22898 5' -54.8 NC_005137.2 + 46440 0.67 0.881932
Target:  5'- -cGACCCGCcCGAACGCGccgACGUGuuGCa -3'
miRNA:   3'- uuUUGGGCGcGUUUGCGU---UGCGC--CGc -5'
22898 5' -54.8 NC_005137.2 + 82942 0.67 0.874615
Target:  5'- --uACCacaaGCGUcgaGAugGCAcGCGCGGCa -3'
miRNA:   3'- uuuUGGg---CGCG---UUugCGU-UGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 51684 0.67 0.874615
Target:  5'- -uGACCaC-CGUAGACGUgauGCGCGGCu -3'
miRNA:   3'- uuUUGG-GcGCGUUUGCGu--UGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 55026 0.67 0.874615
Target:  5'- -uGGCCCGUGCGccgugcaccAACGCG-CGCcGCGu -3'
miRNA:   3'- uuUUGGGCGCGU---------UUGCGUuGCGcCGC- -5'
22898 5' -54.8 NC_005137.2 + 127591 0.67 0.874615
Target:  5'- --uGCCCG-GCGAugGCcguaAACGUGGUa -3'
miRNA:   3'- uuuUGGGCgCGUUugCG----UUGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 69897 0.67 0.874615
Target:  5'- cGAACgCgGCGUugguGCGCGuuuuuuACGCGGCGc -3'
miRNA:   3'- uUUUG-GgCGCGuu--UGCGU------UGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 93512 0.67 0.874615
Target:  5'- -uAGCCgacgGCGCAAAUGCAcGCGuCGGCc -3'
miRNA:   3'- uuUUGGg---CGCGUUUGCGU-UGC-GCCGc -5'
22898 5' -54.8 NC_005137.2 + 104621 0.67 0.86707
Target:  5'- cAAACaCCaucaaUGCAAACGCGGCGCuGGCu -3'
miRNA:   3'- uUUUG-GGc----GCGUUUGCGUUGCG-CCGc -5'
22898 5' -54.8 NC_005137.2 + 72296 0.67 0.86707
Target:  5'- --cACgUGUGCcuaauuGACGcCAACGCGGCGc -3'
miRNA:   3'- uuuUGgGCGCGu-----UUGC-GUUGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 31026 0.67 0.86707
Target:  5'- --uGCgUGCGCugcuGGCGCAcgaagaggcGCGCGGCc -3'
miRNA:   3'- uuuUGgGCGCGu---UUGCGU---------UGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 30742 0.67 0.86707
Target:  5'- uGAAugCCGCGaCGcGCGCccgugcguUGCGGCGc -3'
miRNA:   3'- -UUUugGGCGC-GUuUGCGuu------GCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 69569 0.67 0.862436
Target:  5'- --uGCCaCGCgacacgGCAAACGUcccgacauguuugagAACGCGGCGu -3'
miRNA:   3'- uuuUGG-GCG------CGUUUGCG---------------UUGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 110631 0.67 0.859302
Target:  5'- ----gCCGUGCAcaAACGCGcCGaCGGCGu -3'
miRNA:   3'- uuuugGGCGCGU--UUGCGUuGC-GCCGC- -5'
22898 5' -54.8 NC_005137.2 + 109430 0.67 0.859302
Target:  5'- -cGGCCUauGCGCGGcccaucggucACcCAACGCGGCGu -3'
miRNA:   3'- uuUUGGG--CGCGUU----------UGcGUUGCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.