miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22899 5' -45.6 NC_005137.2 + 7494 0.67 0.999889
Target:  5'- uUAUuuGGAGGUGuuGCaCGAAUGGACAc -3'
miRNA:   3'- gAUAu-UUUCCGCgcCG-GCUUAUUUGU- -5'
22899 5' -45.6 NC_005137.2 + 22754 0.68 0.999493
Target:  5'- uUAUAAAAGGUGCGucacGCCGAu------ -3'
miRNA:   3'- gAUAUUUUCCGCGC----CGGCUuauuugu -5'
22899 5' -45.6 NC_005137.2 + 23751 0.67 0.999854
Target:  5'- gCUGUAuuuAGGGUGCauggGGCCGAAcauuACAc -3'
miRNA:   3'- -GAUAUu--UUCCGCG----CCGGCUUauu-UGU- -5'
22899 5' -45.6 NC_005137.2 + 28726 0.66 0.999966
Target:  5'- --uUGAAAGGCGCGcauuuGCUGGAgcUAAAUg -3'
miRNA:   3'- gauAUUUUCCGCGC-----CGGCUU--AUUUGu -5'
22899 5' -45.6 NC_005137.2 + 32864 1.11 0.019886
Target:  5'- gCUAUAAAAGGCGCGGCCGAAUAAACAa -3'
miRNA:   3'- -GAUAUUUUCCGCGCCGGCUUAUUUGU- -5'
22899 5' -45.6 NC_005137.2 + 36029 0.68 0.999207
Target:  5'- aUGUGAAcacGGGCGCGGgCGuuaaAAGCGu -3'
miRNA:   3'- gAUAUUU---UCCGCGCCgGCuua-UUUGU- -5'
22899 5' -45.6 NC_005137.2 + 40353 0.67 0.99981
Target:  5'- cCUGUAGu-GGCaaaGCGGCCGAccaccAUGAAUc -3'
miRNA:   3'- -GAUAUUuuCCG---CGCCGGCU-----UAUUUGu -5'
22899 5' -45.6 NC_005137.2 + 42782 0.68 0.999493
Target:  5'- -----cGAGGCaGCGuGCCG-AUAAACAu -3'
miRNA:   3'- gauauuUUCCG-CGC-CGGCuUAUUUGU- -5'
22899 5' -45.6 NC_005137.2 + 70702 0.67 0.999685
Target:  5'- -------uGGCGCuGCCGAGUuAACGg -3'
miRNA:   3'- gauauuuuCCGCGcCGGCUUAuUUGU- -5'
22899 5' -45.6 NC_005137.2 + 95600 0.69 0.999018
Target:  5'- -aAUGAuGGGCGCGcGCCGAu------ -3'
miRNA:   3'- gaUAUUuUCCGCGC-CGGCUuauuugu -5'
22899 5' -45.6 NC_005137.2 + 107107 0.67 0.999854
Target:  5'- --uUGGAGGGCGaugaccCGGCCGuagaucAUAAACGa -3'
miRNA:   3'- gauAUUUUCCGC------GCCGGCu-----UAUUUGU- -5'
22899 5' -45.6 NC_005137.2 + 108544 0.67 0.999685
Target:  5'- -cGUGAGcgcGGUGCaGCCGAcgGAGCGc -3'
miRNA:   3'- gaUAUUUu--CCGCGcCGGCUuaUUUGU- -5'
22899 5' -45.6 NC_005137.2 + 112441 0.66 0.999975
Target:  5'- --uUGAAAcGGCGCGGUCGc---AACAc -3'
miRNA:   3'- gauAUUUU-CCGCGCCGGCuuauUUGU- -5'
22899 5' -45.6 NC_005137.2 + 119799 0.69 0.999018
Target:  5'- -------cGGCGaCGGCCGGAgcGGCGc -3'
miRNA:   3'- gauauuuuCCGC-GCCGGCUUauUUGU- -5'
22899 5' -45.6 NC_005137.2 + 125059 0.66 0.999937
Target:  5'- -------cGGCGCGGCgcCGGAUcuGAACGg -3'
miRNA:   3'- gauauuuuCCGCGCCG--GCUUA--UUUGU- -5'
22899 5' -45.6 NC_005137.2 + 129404 0.66 0.999965
Target:  5'- uUGUuuAAAGGCGUGcGCCGAcgggucgGUAAAUu -3'
miRNA:   3'- gAUAu-UUUCCGCGC-CGGCU-------UAUUUGu -5'
22899 5' -45.6 NC_005137.2 + 130006 0.67 0.99981
Target:  5'- -------cGGCGCGGCUGAcgaguuUGAAUAu -3'
miRNA:   3'- gauauuuuCCGCGCCGGCUu-----AUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.