miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
229 5' -45.8 AC_000008.1 + 8402 0.66 0.989962
Target:  5'- gGCGAC-CGcACCCUgugacGAAAGccGCCCg -3'
miRNA:   3'- -CGCUGaGU-UGGGAac---CUUUUauUGGG- -5'
229 5' -45.8 AC_000008.1 + 7127 0.66 0.984556
Target:  5'- cGCGGuCUUuccaguACUCUUGGAucggaAACCCg -3'
miRNA:   3'- -CGCU-GAGu-----UGGGAACCUuuua-UUGGG- -5'
229 5' -45.8 AC_000008.1 + 2874 0.66 0.984556
Target:  5'- uUGGCUCGACaggaaaCCgugUGGAAuAUAACaCCu -3'
miRNA:   3'- cGCUGAGUUG------GGa--ACCUUuUAUUG-GG- -5'
229 5' -45.8 AC_000008.1 + 32739 0.66 0.984556
Target:  5'- cUGGC-CAGgCCUUGcGAGAGUGGCUg -3'
miRNA:   3'- cGCUGaGUUgGGAAC-CUUUUAUUGGg -5'
229 5' -45.8 AC_000008.1 + 29963 0.67 0.979879
Target:  5'- gGCGACaugugucuUCAcACCC-UGGAgcGAGUgGACCCc -3'
miRNA:   3'- -CGCUG--------AGU-UGGGaACCU--UUUA-UUGGG- -5'
229 5' -45.8 AC_000008.1 + 11319 0.68 0.966004
Target:  5'- cGCGGCagaaccuguuucgCGACCgCgagGGAGAggAGCCCg -3'
miRNA:   3'- -CGCUGa------------GUUGG-Gaa-CCUUUuaUUGGG- -5'
229 5' -45.8 AC_000008.1 + 19067 0.68 0.950472
Target:  5'- cGCGGUUC-ACCCUagcugUGGguGAUAACCg -3'
miRNA:   3'- -CGCUGAGuUGGGA-----ACCuuUUAUUGGg -5'
229 5' -45.8 AC_000008.1 + 33959 0.7 0.900955
Target:  5'- aUGAC-CuuCUCUUGGAAAagcgccugGUGACCCa -3'
miRNA:   3'- cGCUGaGuuGGGAACCUUU--------UAUUGGG- -5'
229 5' -45.8 AC_000008.1 + 30582 0.71 0.884493
Target:  5'- cGCuGACgagGACCCUgcgcccgUGGAAAgacAUGACCCu -3'
miRNA:   3'- -CG-CUGag-UUGGGA-------ACCUUU---UAUUGGG- -5'
229 5' -45.8 AC_000008.1 + 5474 0.71 0.869292
Target:  5'- cGCGGCgUGGCCCUUGGcgcgcagcuuGCCCu -3'
miRNA:   3'- -CGCUGaGUUGGGAACCuuuuau----UGGG- -5'
229 5' -45.8 AC_000008.1 + 17065 0.71 0.868419
Target:  5'- aGCGACUgGAagaugUCUUGGAaaAAAUGACCg -3'
miRNA:   3'- -CGCUGAgUUg----GGAACCU--UUUAUUGGg -5'
229 5' -45.8 AC_000008.1 + 35305 0.71 0.859528
Target:  5'- aGCGACcgaaaUAGCCCg-GGGGAAUAcauACCCg -3'
miRNA:   3'- -CGCUGa----GUUGGGaaCCUUUUAU---UGGG- -5'
229 5' -45.8 AC_000008.1 + 27970 0.73 0.789953
Target:  5'- cCGGCUUAccGCCCagGGAGAGcuuGCCCg -3'
miRNA:   3'- cGCUGAGU--UGGGaaCCUUUUau-UGGG- -5'
229 5' -45.8 AC_000008.1 + 24991 1.17 0.00208
Target:  5'- cGCGACUCAACCCUUGGAAAAUAACCCu -3'
miRNA:   3'- -CGCUGAGUUGGGAACCUUUUAUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.