miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22900 3' -56.3 NC_005137.2 + 15725 0.66 0.867703
Target:  5'- --cAGCUCGUC-CGcugcucgccaaggucGCGGCGCCAGc- -3'
miRNA:   3'- uuuUCGGGCAGcGC---------------UGCCGCGGUUug -5'
22900 3' -56.3 NC_005137.2 + 20192 0.66 0.864652
Target:  5'- ---uGCgCGUCgGCgGGCGGCGUCGAuuGCg -3'
miRNA:   3'- uuuuCGgGCAG-CG-CUGCCGCGGUU--UG- -5'
22900 3' -56.3 NC_005137.2 + 67044 0.66 0.864652
Target:  5'- --uGGCCCaUCGC---GGCGUCAAACg -3'
miRNA:   3'- uuuUCGGGcAGCGcugCCGCGGUUUG- -5'
22900 3' -56.3 NC_005137.2 + 19371 0.66 0.864652
Target:  5'- ---uGCUCGauuaCGUGGCGGCGCuCGAAg -3'
miRNA:   3'- uuuuCGGGCa---GCGCUGCCGCG-GUUUg -5'
22900 3' -56.3 NC_005137.2 + 33768 0.66 0.864652
Target:  5'- --uGGCCauuGUgCGCGGCGGCGUUguGCu -3'
miRNA:   3'- uuuUCGGg--CA-GCGCUGCCGCGGuuUG- -5'
22900 3' -56.3 NC_005137.2 + 26476 0.66 0.848882
Target:  5'- -uGGGCCgCGgCGUGugGGUGCCu--- -3'
miRNA:   3'- uuUUCGG-GCaGCGCugCCGCGGuuug -5'
22900 3' -56.3 NC_005137.2 + 57224 0.66 0.848882
Target:  5'- --cAGgCCGUgGCGaACGaggcuacgcccGCGCCAAACg -3'
miRNA:   3'- uuuUCgGGCAgCGC-UGC-----------CGCGGUUUG- -5'
22900 3' -56.3 NC_005137.2 + 31760 0.66 0.832296
Target:  5'- ---uGCCCGUggcaaCGgGGCGcGCGCCcaAAACa -3'
miRNA:   3'- uuuuCGGGCA-----GCgCUGC-CGCGG--UUUG- -5'
22900 3' -56.3 NC_005137.2 + 96366 0.66 0.823716
Target:  5'- ---uGCUuaCGcCGCGACGGgGCCAAc- -3'
miRNA:   3'- uuuuCGG--GCaGCGCUGCCgCGGUUug -5'
22900 3' -56.3 NC_005137.2 + 27883 0.67 0.814955
Target:  5'- --uGGCgaUCG-CGUGGCGGCGCCAc-- -3'
miRNA:   3'- uuuUCG--GGCaGCGCUGCCGCGGUuug -5'
22900 3' -56.3 NC_005137.2 + 473 0.67 0.806022
Target:  5'- -----gCCGcCGCGGCGGCuGCCcAGCg -3'
miRNA:   3'- uuuucgGGCaGCGCUGCCG-CGGuUUG- -5'
22900 3' -56.3 NC_005137.2 + 17060 0.67 0.796007
Target:  5'- --uAGCuuGuaucgcaUCGCGACGGUGCCu--- -3'
miRNA:   3'- uuuUCGggC-------AGCGCUGCCGCGGuuug -5'
22900 3' -56.3 NC_005137.2 + 105491 0.67 0.787674
Target:  5'- ---cGCgCGUugcaacgagCGUGACGGCGCCAu-- -3'
miRNA:   3'- uuuuCGgGCA---------GCGCUGCCGCGGUuug -5'
22900 3' -56.3 NC_005137.2 + 73551 0.68 0.749311
Target:  5'- --uGGCCuCGUUGCG-CGGCGuCCAc-- -3'
miRNA:   3'- uuuUCGG-GCAGCGCuGCCGC-GGUuug -5'
22900 3' -56.3 NC_005137.2 + 40432 0.68 0.739429
Target:  5'- ---uGCUCGUUGaCGAcuaCGGCGCCGuAACa -3'
miRNA:   3'- uuuuCGGGCAGC-GCU---GCCGCGGU-UUG- -5'
22900 3' -56.3 NC_005137.2 + 1485 0.68 0.736445
Target:  5'- cGAAGCgcuuccgguacauuCCGcCGCG-CGGCGCCGAcGCg -3'
miRNA:   3'- uUUUCG--------------GGCaGCGCuGCCGCGGUU-UG- -5'
22900 3' -56.3 NC_005137.2 + 29662 0.69 0.682572
Target:  5'- uGAAGuGCCCGUacucguuugcgguugCGuUGACGGCGUCAAAUa -3'
miRNA:   3'- -UUUU-CGGGCA---------------GC-GCUGCCGCGGUUUG- -5'
22900 3' -56.3 NC_005137.2 + 110617 0.69 0.678439
Target:  5'- ---uGUCCGUgGUGACGGCcguGCaCAAACg -3'
miRNA:   3'- uuuuCGGGCAgCGCUGCCG---CG-GUUUG- -5'
22900 3' -56.3 NC_005137.2 + 33242 0.69 0.678439
Target:  5'- ----aCCCGUCGCaGCGaGCGCCuGGCu -3'
miRNA:   3'- uuuucGGGCAGCGcUGC-CGCGGuUUG- -5'
22900 3' -56.3 NC_005137.2 + 98378 0.69 0.657691
Target:  5'- --uGGCgCCGUCGCGACGG-GCUu--- -3'
miRNA:   3'- uuuUCG-GGCAGCGCUGCCgCGGuuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.