miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22900 3' -56.3 NC_005137.2 + 1853 0.7 0.647282
Target:  5'- ---uGCaCCGUCGUcGCGGCGCCu--- -3'
miRNA:   3'- uuuuCG-GGCAGCGcUGCCGCGGuuug -5'
22900 3' -56.3 NC_005137.2 + 30758 0.7 0.647282
Target:  5'- ---cGCCCGUgCGUuGCGGCGCcCGGAUc -3'
miRNA:   3'- uuuuCGGGCA-GCGcUGCCGCG-GUUUG- -5'
22900 3' -56.3 NC_005137.2 + 33675 0.7 0.64624
Target:  5'- uGGAGCgCGUUGCGucuuugaGCGcaaGCGCCAAGCa -3'
miRNA:   3'- uUUUCGgGCAGCGC-------UGC---CGCGGUUUG- -5'
22900 3' -56.3 NC_005137.2 + 27463 0.7 0.626433
Target:  5'- ---cGCaauugaCGUCGCGACGuGCGCCGc-- -3'
miRNA:   3'- uuuuCGg-----GCAGCGCUGC-CGCGGUuug -5'
22900 3' -56.3 NC_005137.2 + 125049 0.71 0.595213
Target:  5'- cGGAGCCgGgcgGCG-CGGCGCCGGAUc -3'
miRNA:   3'- uUUUCGGgCag-CGCuGCCGCGGUUUG- -5'
22900 3' -56.3 NC_005137.2 + 74425 0.71 0.554012
Target:  5'- ---cGCCCGUCGCGucgggucccauaACGGCGCa---- -3'
miRNA:   3'- uuuuCGGGCAGCGC------------UGCCGCGguuug -5'
22900 3' -56.3 NC_005137.2 + 113940 0.72 0.533718
Target:  5'- aAAAGGCaCCGUCGCGAUG-CGauaCAAGCu -3'
miRNA:   3'- -UUUUCG-GGCAGCGCUGCcGCg--GUUUG- -5'
22900 3' -56.3 NC_005137.2 + 35362 0.72 0.513695
Target:  5'- ---uGCCCGUCgGCGcACGGCGCac-GCg -3'
miRNA:   3'- uuuuCGGGCAG-CGC-UGCCGCGguuUG- -5'
22900 3' -56.3 NC_005137.2 + 65267 0.72 0.493986
Target:  5'- -cGAGCCCGgcgGCGACGGUGaCCAu-- -3'
miRNA:   3'- uuUUCGGGCag-CGCUGCCGC-GGUuug -5'
22900 3' -56.3 NC_005137.2 + 87318 0.73 0.44633
Target:  5'- cGAAGCgCGUCGCGAaaCGGCGCagcuGGCc -3'
miRNA:   3'- uUUUCGgGCAGCGCU--GCCGCGgu--UUG- -5'
22900 3' -56.3 NC_005137.2 + 17329 0.73 0.437107
Target:  5'- ---uGCgCGUCGCaGAuaaUGGCGCCAAACa -3'
miRNA:   3'- uuuuCGgGCAGCG-CU---GCCGCGGUUUG- -5'
22900 3' -56.3 NC_005137.2 + 99992 0.74 0.392702
Target:  5'- --cAGCCCGaCGUaGCGGCGCCGAccaGCg -3'
miRNA:   3'- uuuUCGGGCaGCGcUGCCGCGGUU---UG- -5'
22900 3' -56.3 NC_005137.2 + 64151 0.77 0.291799
Target:  5'- uGGAAGCgcacCCGUgCGCGuuuaACGGCGCCGGACa -3'
miRNA:   3'- -UUUUCG----GGCA-GCGC----UGCCGCGGUUUG- -5'
22900 3' -56.3 NC_005137.2 + 32630 1.06 0.003118
Target:  5'- aAAAAGCCCGUCGCGACGGCGCCAAACc -3'
miRNA:   3'- -UUUUCGGGCAGCGCUGCCGCGGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.