Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22900 | 3' | -56.3 | NC_005137.2 | + | 473 | 0.67 | 0.806022 |
Target: 5'- -----gCCGcCGCGGCGGCuGCCcAGCg -3' miRNA: 3'- uuuucgGGCaGCGCUGCCG-CGGuUUG- -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 1485 | 0.68 | 0.736445 |
Target: 5'- cGAAGCgcuuccgguacauuCCGcCGCG-CGGCGCCGAcGCg -3' miRNA: 3'- uUUUCG--------------GGCaGCGCuGCCGCGGUU-UG- -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 1853 | 0.7 | 0.647282 |
Target: 5'- ---uGCaCCGUCGUcGCGGCGCCu--- -3' miRNA: 3'- uuuuCG-GGCAGCGcUGCCGCGGuuug -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 15725 | 0.66 | 0.867703 |
Target: 5'- --cAGCUCGUC-CGcugcucgccaaggucGCGGCGCCAGc- -3' miRNA: 3'- uuuUCGGGCAGcGC---------------UGCCGCGGUUug -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 17060 | 0.67 | 0.796007 |
Target: 5'- --uAGCuuGuaucgcaUCGCGACGGUGCCu--- -3' miRNA: 3'- uuuUCGggC-------AGCGCUGCCGCGGuuug -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 17329 | 0.73 | 0.437107 |
Target: 5'- ---uGCgCGUCGCaGAuaaUGGCGCCAAACa -3' miRNA: 3'- uuuuCGgGCAGCG-CU---GCCGCGGUUUG- -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 19371 | 0.66 | 0.864652 |
Target: 5'- ---uGCUCGauuaCGUGGCGGCGCuCGAAg -3' miRNA: 3'- uuuuCGGGCa---GCGCUGCCGCG-GUUUg -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 20192 | 0.66 | 0.864652 |
Target: 5'- ---uGCgCGUCgGCgGGCGGCGUCGAuuGCg -3' miRNA: 3'- uuuuCGgGCAG-CG-CUGCCGCGGUU--UG- -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 26476 | 0.66 | 0.848882 |
Target: 5'- -uGGGCCgCGgCGUGugGGUGCCu--- -3' miRNA: 3'- uuUUCGG-GCaGCGCugCCGCGGuuug -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 27463 | 0.7 | 0.626433 |
Target: 5'- ---cGCaauugaCGUCGCGACGuGCGCCGc-- -3' miRNA: 3'- uuuuCGg-----GCAGCGCUGC-CGCGGUuug -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 27883 | 0.67 | 0.814955 |
Target: 5'- --uGGCgaUCG-CGUGGCGGCGCCAc-- -3' miRNA: 3'- uuuUCG--GGCaGCGCUGCCGCGGUuug -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 29662 | 0.69 | 0.682572 |
Target: 5'- uGAAGuGCCCGUacucguuugcgguugCGuUGACGGCGUCAAAUa -3' miRNA: 3'- -UUUU-CGGGCA---------------GC-GCUGCCGCGGUUUG- -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 30758 | 0.7 | 0.647282 |
Target: 5'- ---cGCCCGUgCGUuGCGGCGCcCGGAUc -3' miRNA: 3'- uuuuCGGGCA-GCGcUGCCGCG-GUUUG- -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 31760 | 0.66 | 0.832296 |
Target: 5'- ---uGCCCGUggcaaCGgGGCGcGCGCCcaAAACa -3' miRNA: 3'- uuuuCGGGCA-----GCgCUGC-CGCGG--UUUG- -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 32630 | 1.06 | 0.003118 |
Target: 5'- aAAAAGCCCGUCGCGACGGCGCCAAACc -3' miRNA: 3'- -UUUUCGGGCAGCGCUGCCGCGGUUUG- -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 33242 | 0.69 | 0.678439 |
Target: 5'- ----aCCCGUCGCaGCGaGCGCCuGGCu -3' miRNA: 3'- uuuucGGGCAGCGcUGC-CGCGGuUUG- -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 33675 | 0.7 | 0.64624 |
Target: 5'- uGGAGCgCGUUGCGucuuugaGCGcaaGCGCCAAGCa -3' miRNA: 3'- uUUUCGgGCAGCGC-------UGC---CGCGGUUUG- -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 33768 | 0.66 | 0.864652 |
Target: 5'- --uGGCCauuGUgCGCGGCGGCGUUguGCu -3' miRNA: 3'- uuuUCGGg--CA-GCGCUGCCGCGGuuUG- -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 35362 | 0.72 | 0.513695 |
Target: 5'- ---uGCCCGUCgGCGcACGGCGCac-GCg -3' miRNA: 3'- uuuuCGGGCAG-CGC-UGCCGCGguuUG- -5' |
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22900 | 3' | -56.3 | NC_005137.2 | + | 40432 | 0.68 | 0.739429 |
Target: 5'- ---uGCUCGUUGaCGAcuaCGGCGCCGuAACa -3' miRNA: 3'- uuuuCGGGCAGC-GCU---GCCGCGGU-UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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