miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22901 5' -50.6 NC_005137.2 + 40374 0.66 0.993676
Target:  5'- aCCACCAUGAAuCGCAuucuuGUAAAaUGGGu -3'
miRNA:   3'- gGGUGGUACUUcGCGU-----CGUUUaGUCC- -5'
22901 5' -50.6 NC_005137.2 + 46634 0.66 0.993676
Target:  5'- aCCGCCAUGGuGGacaGCGGCGcua-AGGg -3'
miRNA:   3'- gGGUGGUACU-UCg--CGUCGUuuagUCC- -5'
22901 5' -50.6 NC_005137.2 + 68763 0.66 0.993676
Target:  5'- uCCUACCAcaaUGucuacaauGGUGCAGCGGA-CAGa -3'
miRNA:   3'- -GGGUGGU---ACu-------UCGCGUCGUUUaGUCc -5'
22901 5' -50.6 NC_005137.2 + 40539 0.66 0.992688
Target:  5'- aCCACaaugGAAGCGCAGCGu------ -3'
miRNA:   3'- gGGUGgua-CUUCGCGUCGUuuagucc -5'
22901 5' -50.6 NC_005137.2 + 22398 0.66 0.992688
Target:  5'- gCCACCAgguugugcuUGAAGCGCaccacguaaaAGCAca-CGGGc -3'
miRNA:   3'- gGGUGGU---------ACUUCGCG----------UCGUuuaGUCC- -5'
22901 5' -50.6 NC_005137.2 + 96332 0.66 0.992583
Target:  5'- cCCCACgGcgcuugcUGguGCgGUGGCGGGUCGGGu -3'
miRNA:   3'- -GGGUGgU-------ACuuCG-CGUCGUUUAGUCC- -5'
22901 5' -50.6 NC_005137.2 + 16891 0.66 0.991581
Target:  5'- uUCAUCcgGAAGCGguGCAGAcgcacgcggcgcUCGGc -3'
miRNA:   3'- gGGUGGuaCUUCGCguCGUUU------------AGUCc -5'
22901 5' -50.6 NC_005137.2 + 16559 0.66 0.991581
Target:  5'- aCCCACCucauUGGAGCGaAGUGAguGUUAuGGa -3'
miRNA:   3'- -GGGUGGu---ACUUCGCgUCGUU--UAGU-CC- -5'
22901 5' -50.6 NC_005137.2 + 50224 0.66 0.988971
Target:  5'- --aGCCAaacucGCGCAGCAGcUCGGGg -3'
miRNA:   3'- gggUGGUacuu-CGCGUCGUUuAGUCC- -5'
22901 5' -50.6 NC_005137.2 + 61443 0.66 0.988971
Target:  5'- gUuuGCCGUGucGCGUGGCAAGUUg-- -3'
miRNA:   3'- -GggUGGUACuuCGCGUCGUUUAGucc -5'
22901 5' -50.6 NC_005137.2 + 123054 0.66 0.988971
Target:  5'- gCCGCCGgucGAGGuCGCGGCGcgcagccuuGGUgAGGu -3'
miRNA:   3'- gGGUGGUa--CUUC-GCGUCGU---------UUAgUCC- -5'
22901 5' -50.6 NC_005137.2 + 118231 0.66 0.987449
Target:  5'- cCCCAaCAUuuGGCGCAGUAgcucGAUCGGc -3'
miRNA:   3'- -GGGUgGUAcuUCGCGUCGU----UUAGUCc -5'
22901 5' -50.6 NC_005137.2 + 124967 0.67 0.983925
Target:  5'- -gCGCCGgugaUGggGCGCuGCGcugcguuggaAAUCGGGc -3'
miRNA:   3'- ggGUGGU----ACuuCGCGuCGU----------UUAGUCC- -5'
22901 5' -50.6 NC_005137.2 + 32464 0.67 0.981904
Target:  5'- gCCAaaauaCAUGgcGUGCAGCAucuUCAGc -3'
miRNA:   3'- gGGUg----GUACuuCGCGUCGUuu-AGUCc -5'
22901 5' -50.6 NC_005137.2 + 9330 0.67 0.981904
Target:  5'- uUUAUCAUGGAucGCGUAGCAGAccaaauuuacUCGGGc -3'
miRNA:   3'- gGGUGGUACUU--CGCGUCGUUU----------AGUCC- -5'
22901 5' -50.6 NC_005137.2 + 79587 0.67 0.979698
Target:  5'- gCCGCCGUGcgauAGCGUcGCAuAUCAa- -3'
miRNA:   3'- gGGUGGUACu---UCGCGuCGUuUAGUcc -5'
22901 5' -50.6 NC_005137.2 + 110023 0.68 0.971882
Target:  5'- aCCCGuuugCGUGcAAGCGCGGCAAAacgcgcgccgCAGGc -3'
miRNA:   3'- -GGGUg---GUAC-UUCGCGUCGUUUa---------GUCC- -5'
22901 5' -50.6 NC_005137.2 + 63006 0.7 0.935987
Target:  5'- aCCCAUgGUGcGGCGCcGGCGuGUCGGc -3'
miRNA:   3'- -GGGUGgUACuUCGCG-UCGUuUAGUCc -5'
22901 5' -50.6 NC_005137.2 + 36616 0.71 0.900583
Target:  5'- gUCCACCugcggguUGggGCGCAcCGAGUCAa- -3'
miRNA:   3'- -GGGUGGu------ACuuCGCGUcGUUUAGUcc -5'
22901 5' -50.6 NC_005137.2 + 98008 0.72 0.839445
Target:  5'- gCCCGCCAagUGGccAGCGU-GCAcGUCGGGc -3'
miRNA:   3'- -GGGUGGU--ACU--UCGCGuCGUuUAGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.