miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
22902	3'	-57.2	NC_005137.2	+	5163	0.66	0.812564
	Target:  5'- uGGCuAGGgGUGGCuGGCUGaagcuggcUGACuGGUa -3' miRNA:   3'- -CUG-UCCgCACCGuCCGAU--------ACUG-CCAc -5'
22902	3'	-57.2	NC_005137.2	+	8634	0.66	0.803651
	Target:  5'- cGGCGGGCGUgGGCGuGCUAUuGGcCGGa- -3' miRNA:   3'- -CUGUCCGCA-CCGUcCGAUA-CU-GCCac -5'
22902	3'	-57.2	NC_005137.2	+	21617	0.67	0.766497
	Target:  5'- cGAC-GGUGU--CAGGCUgcaguGUGACGGUGg -3' miRNA:   3'- -CUGuCCGCAccGUCCGA-----UACUGCCAC- -5'
22902	3'	-57.2	NC_005137.2	+	72010	0.68	0.724393
	Target:  5'- uGACAGGCGgcucauuuacaacuUGGUGGGC----ACGGUGg -3' miRNA:   3'- -CUGUCCGC--------------ACCGUCCGauacUGCCAC- -5'
22902	3'	-57.2	NC_005137.2	+	78433	0.68	0.695103
	Target:  5'- uGGCugAGGCgGUGGCuguugagaugguGGCUGaGGCGGUGg -3' miRNA:   3'- -CUG--UCCG-CACCGu-----------CCGAUaCUGCCAC- -5'
22902	3'	-57.2	NC_005137.2	+	116822	0.73	0.426267
	Target:  5'- uGGCAGGCGcGGCAGGCUuuguguuugagGACGcGUa -3' miRNA:   3'- -CUGUCCGCaCCGUCCGAua---------CUGC-CAc -5'
22902	3'	-57.2	NC_005137.2	+	30020	1.08	0.001897
	Target:  5'- gGACAGGCGUGGCAGGCUAUGACGGUGa -3' miRNA:   3'- -CUGUCCGCACCGUCCGAUACUGCCAC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home