Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22902 | 5' | -62.5 | NC_005137.2 | + | 51593 | 0.66 | 0.53073 |
Target: 5'- aUCACGGGCGCAauguuaguauucaauGUgGCCGGGUCa-- -3' miRNA: 3'- aAGUGUCCGUGU---------------CGaCGGCCCGGgca -5' |
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22902 | 5' | -62.5 | NC_005137.2 | + | 99263 | 0.66 | 0.525857 |
Target: 5'- -cCACGGGCACAGUuuaacggUGaCGGuGCCUGa -3' miRNA: 3'- aaGUGUCCGUGUCG-------ACgGCC-CGGGCa -5' |
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22902 | 5' | -62.5 | NC_005137.2 | + | 20357 | 0.67 | 0.488477 |
Target: 5'- gUCACGGGCACaAGCcaaacGCCGucGGCgCGUu -3' miRNA: 3'- aAGUGUCCGUG-UCGa----CGGC--CCGgGCA- -5' |
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22902 | 5' | -62.5 | NC_005137.2 | + | 33246 | 0.67 | 0.469796 |
Target: 5'- gUCGCAGcgaGCGCcuGGCUGuUCGaGGCCCGg -3' miRNA: 3'- aAGUGUC---CGUG--UCGAC-GGC-CCGGGCa -5' |
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22902 | 5' | -62.5 | NC_005137.2 | + | 19608 | 0.67 | 0.442479 |
Target: 5'- -aCACAGGgGCGGCcGCUGcGGCCUu- -3' miRNA: 3'- aaGUGUCCgUGUCGaCGGC-CCGGGca -5' |
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22902 | 5' | -62.5 | NC_005137.2 | + | 95499 | 0.69 | 0.374302 |
Target: 5'- -gCACGGGCGCAucGCUGaCGuGGCCgGUg -3' miRNA: 3'- aaGUGUCCGUGU--CGACgGC-CCGGgCA- -5' |
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22902 | 5' | -62.5 | NC_005137.2 | + | 100947 | 0.69 | 0.342987 |
Target: 5'- gUCACGGGCcCGGCaGCUGuGCCUGUg -3' miRNA: 3'- aAGUGUCCGuGUCGaCGGCcCGGGCA- -5' |
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22902 | 5' | -62.5 | NC_005137.2 | + | 30054 | 1.05 | 0.000938 |
Target: 5'- uUUCACAGGCACAGCUGCCGGGCCCGUg -3' miRNA: 3'- -AAGUGUCCGUGUCGACGGCCCGGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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