miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22903 3' -58.9 NC_005137.2 + 88585 0.66 0.781763
Target:  5'- cGGCGGACAcAUnACguGUCcCGGCGGg -3'
miRNA:   3'- -CCGCCUGUcUGgUGguCGGaGUCGCU- -5'
22903 3' -58.9 NC_005137.2 + 64661 0.66 0.763231
Target:  5'- uGGCGGGCAauGACCcggACaCGGCgUUCGGgGAa -3'
miRNA:   3'- -CCGCCUGU--CUGG---UG-GUCG-GAGUCgCU- -5'
22903 3' -58.9 NC_005137.2 + 81291 0.66 0.763231
Target:  5'- aGCGGAC-GAaacaccuaCACCGGCCaagCGGCGc -3'
miRNA:   3'- cCGCCUGuCUg-------GUGGUCGGa--GUCGCu -5'
22903 3' -58.9 NC_005137.2 + 123540 0.66 0.752839
Target:  5'- cGGUGGGCGGcuauugcACCACaaacagcguGCCUC-GCGAu -3'
miRNA:   3'- -CCGCCUGUC-------UGGUGgu-------CGGAGuCGCU- -5'
22903 3' -58.9 NC_005137.2 + 51294 0.66 0.734601
Target:  5'- cGGCGGGCagcggcauaacgAGugCGCCAaGUaacgCAGCGGg -3'
miRNA:   3'- -CCGCCUG------------UCugGUGGU-CGga--GUCGCU- -5'
22903 3' -58.9 NC_005137.2 + 130618 0.67 0.675232
Target:  5'- cGCGGACAcgcgcgccGACaaaGCCAGCaaaAGCGAg -3'
miRNA:   3'- cCGCCUGU--------CUGg--UGGUCGgagUCGCU- -5'
22903 3' -58.9 NC_005137.2 + 32208 0.68 0.655074
Target:  5'- cGGCGGcguuugGCAGACgACaUGGCCUUGGCa- -3'
miRNA:   3'- -CCGCC------UGUCUGgUG-GUCGGAGUCGcu -5'
22903 3' -58.9 NC_005137.2 + 130571 0.68 0.655074
Target:  5'- cGGuCGGACGuuGCCACCAGCgaaucaacCAGCGGa -3'
miRNA:   3'- -CC-GCCUGUc-UGGUGGUCGga------GUCGCU- -5'
22903 3' -58.9 NC_005137.2 + 55770 0.68 0.655074
Target:  5'- cGCGGuCAcGGCCAucauuUCGGCCagCAGCGAa -3'
miRNA:   3'- cCGCCuGU-CUGGU-----GGUCGGa-GUCGCU- -5'
22903 3' -58.9 NC_005137.2 + 35492 0.68 0.655074
Target:  5'- aGCGca-AGucGCCACCGGCCacgUCAGCGAu -3'
miRNA:   3'- cCGCcugUC--UGGUGGUCGG---AGUCGCU- -5'
22903 3' -58.9 NC_005137.2 + 99310 0.69 0.554421
Target:  5'- uGGUGGGCGGGCCGCUgccaucaaggauGGCaaaCAGCGc -3'
miRNA:   3'- -CCGCCUGUCUGGUGG------------UCGga-GUCGCu -5'
22903 3' -58.9 NC_005137.2 + 88492 0.7 0.519123
Target:  5'- gGGCGGGCgAGcgauuagcgcgcuauACCGCCGGUCUUuuuGCGGg -3'
miRNA:   3'- -CCGCCUG-UC---------------UGGUGGUCGGAGu--CGCU- -5'
22903 3' -58.9 NC_005137.2 + 78710 0.72 0.39732
Target:  5'- gGGUGG-CAGAacggCugCGGCUUCGGCGAu -3'
miRNA:   3'- -CCGCCuGUCUg---GugGUCGGAGUCGCU- -5'
22903 3' -58.9 NC_005137.2 + 16901 0.77 0.203869
Target:  5'- aGCGGuGCAGACgCACgCGGCgCUCGGCGAa -3'
miRNA:   3'- cCGCC-UGUCUG-GUG-GUCG-GAGUCGCU- -5'
22903 3' -58.9 NC_005137.2 + 27451 1.1 0.001157
Target:  5'- uGGCGGACAGACCACCAGCCUCAGCGAc -3'
miRNA:   3'- -CCGCCUGUCUGGUGGUCGGAGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.