miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22903 5' -53.1 NC_005137.2 + 57225 0.66 0.949272
Target:  5'- --aGGCCGu-GGCGAACgaggcuACGCCc -3'
miRNA:   3'- cuaCCGGUucCCGCUUGaau---UGCGGu -5'
22903 5' -53.1 NC_005137.2 + 64157 0.66 0.938518
Target:  5'- -cUGGCUGAuaagcgcacacaauGGGCgGAACgaAACGCCAa -3'
miRNA:   3'- cuACCGGUU--------------CCCG-CUUGaaUUGCGGU- -5'
22903 5' -53.1 NC_005137.2 + 99808 0.67 0.929695
Target:  5'- -cUGGUaCAAGGGCGAcGCgggccgguuGCGCCGu -3'
miRNA:   3'- cuACCG-GUUCCCGCU-UGaau------UGCGGU- -5'
22903 5' -53.1 NC_005137.2 + 81311 0.67 0.918356
Target:  5'- --cGGCCAAGcGGCGcguAgUUAcCGCCGc -3'
miRNA:   3'- cuaCCGGUUC-CCGCu--UgAAUuGCGGU- -5'
22903 5' -53.1 NC_005137.2 + 33006 0.67 0.912298
Target:  5'- -cUGGCCAcuuGGCGGGCgcacccACGCCGc -3'
miRNA:   3'- cuACCGGUuc-CCGCUUGaau---UGCGGU- -5'
22903 5' -53.1 NC_005137.2 + 95517 0.67 0.905983
Target:  5'- cGUGGCCGGuGGCGA-CUU-GCGCUg -3'
miRNA:   3'- cUACCGGUUcCCGCUuGAAuUGCGGu -5'
22903 5' -53.1 NC_005137.2 + 94542 0.68 0.899413
Target:  5'- -uUGGCCAaaaAGGGCGggUUggcgauaaAACGCg- -3'
miRNA:   3'- cuACCGGU---UCCCGCuuGAa-------UUGCGgu -5'
22903 5' -53.1 NC_005137.2 + 64287 0.69 0.838201
Target:  5'- cGAUGGUCAAuacgcuugcucGGGUGAcgcGCgcuGCGCCAa -3'
miRNA:   3'- -CUACCGGUU-----------CCCGCU---UGaauUGCGGU- -5'
22903 5' -53.1 NC_005137.2 + 12162 0.7 0.793131
Target:  5'- -uUGGCCGAGuGGUGAAaUUGAuCGCCc -3'
miRNA:   3'- cuACCGGUUC-CCGCUUgAAUU-GCGGu -5'
22903 5' -53.1 NC_005137.2 + 26964 0.75 0.544277
Target:  5'- --cGGCCAcaaAGGGCGA-CUUGAUGCaCAu -3'
miRNA:   3'- cuaCCGGU---UCCCGCUuGAAUUGCG-GU- -5'
22903 5' -53.1 NC_005137.2 + 27486 1.09 0.004252
Target:  5'- aGAUGGCCAAGGGCGAACUUAACGCCAc -3'
miRNA:   3'- -CUACCGGUUCCCGCUUGAAUUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.