miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22904 3' -52.6 NC_005137.2 + 97222 0.67 0.948422
Target:  5'- uGCAACG--UUGGCaCAGCacaaCGC-CGCCg -3'
miRNA:   3'- -CGUUGCuaAGCCG-GUUGa---GCGuGCGG- -5'
22904 3' -52.6 NC_005137.2 + 40251 0.67 0.952657
Target:  5'- -gGAUGcaUUGGCCGugUgGCGCGCa -3'
miRNA:   3'- cgUUGCuaAGCCGGUugAgCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 58882 0.67 0.963936
Target:  5'- cGCAGCGuua-GGCgAA--CGUACGCCg -3'
miRNA:   3'- -CGUUGCuaagCCGgUUgaGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 12954 0.66 0.975849
Target:  5'- cGCuGCGGcgCGGCCAcaaACgguugGCACGCa -3'
miRNA:   3'- -CGuUGCUaaGCCGGU---UGag---CGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 34611 0.7 0.878315
Target:  5'- gGUAGCGG-UCGGCgCGGCUCcauauuuuuauGUugGCCc -3'
miRNA:   3'- -CGUUGCUaAGCCG-GUUGAG-----------CGugCGG- -5'
22904 3' -52.6 NC_005137.2 + 74343 0.68 0.93922
Target:  5'- aCAGCGccgUCGGCaAGCacgaggUCGCACGCg -3'
miRNA:   3'- cGUUGCua-AGCCGgUUG------AGCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 129502 0.67 0.952657
Target:  5'- aCAACGcgUCGGC--GC-CGCGCGgCg -3'
miRNA:   3'- cGUUGCuaAGCCGguUGaGCGUGCgG- -5'
22904 3' -52.6 NC_005137.2 + 54480 0.66 0.978312
Target:  5'- uUAGCGucaaaCuGCCGACggaagUGCACGCCg -3'
miRNA:   3'- cGUUGCuaa--GcCGGUUGa----GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 118116 0.68 0.93922
Target:  5'- cGCu-CGuGUUCGGCCAccuguUUCGCcccGCGCCc -3'
miRNA:   3'- -CGuuGC-UAAGCCGGUu----GAGCG---UGCGG- -5'
22904 3' -52.6 NC_005137.2 + 103606 0.66 0.978312
Target:  5'- uGCAGCGGccgcuacuUUUGGCCGGacggCGUGCGUUu -3'
miRNA:   3'- -CGUUGCU--------AAGCCGGUUga--GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 108548 0.67 0.952657
Target:  5'- aGC-GCGGUgCaGCCGACggagCGCACGUUg -3'
miRNA:   3'- -CGuUGCUAaGcCGGUUGa---GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 43671 0.68 0.943944
Target:  5'- cGCcauGCGGUU-GGCCAGCU---GCGCCg -3'
miRNA:   3'- -CGu--UGCUAAgCCGGUUGAgcgUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 95577 0.67 0.956651
Target:  5'- gGCAGCGugUUGGCguuguaguuaaUGAUgggCGCGCGCCg -3'
miRNA:   3'- -CGUUGCuaAGCCG-----------GUUGa--GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 100132 0.67 0.963593
Target:  5'- uGCGGCGcauuggcGUUCGGUCG---UGCACGCUu -3'
miRNA:   3'- -CGUUGC-------UAAGCCGGUugaGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 71066 0.66 0.970319
Target:  5'- uCAACGAggCGcGCCAGCUCa-GCGUa -3'
miRNA:   3'- cGUUGCUaaGC-CGGUUGAGcgUGCGg -5'
22904 3' -52.6 NC_005137.2 + 112529 0.66 0.975849
Target:  5'- -uGACG--UCGGCaCAGCcgCGCACuauGCCa -3'
miRNA:   3'- cgUUGCuaAGCCG-GUUGa-GCGUG---CGG- -5'
22904 3' -52.6 NC_005137.2 + 35106 0.7 0.863261
Target:  5'- gGCAACGGUaCGGUCAccGCgaCGCACcauGCCc -3'
miRNA:   3'- -CGUUGCUAaGCCGGU--UGa-GCGUG---CGG- -5'
22904 3' -52.6 NC_005137.2 + 16282 0.7 0.878315
Target:  5'- aCAACGAUcCGGCUAACaCGUACGa- -3'
miRNA:   3'- cGUUGCUAaGCCGGUUGaGCGUGCgg -5'
22904 3' -52.6 NC_005137.2 + 51292 0.69 0.905629
Target:  5'- uGCGGCGGgcagCGGCaUAACgaGUGCGCCa -3'
miRNA:   3'- -CGUUGCUaa--GCCG-GUUGagCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 36709 0.68 0.92355
Target:  5'- aGUAAUGg--CGcGCaaacaauuaAACUCGCGCGCCa -3'
miRNA:   3'- -CGUUGCuaaGC-CGg--------UUGAGCGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.