miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22904 3' -52.6 NC_005137.2 + 80072 0.67 0.963936
Target:  5'- uGCAGCGAUUCaaCUAGUUUGCGUGCCg -3'
miRNA:   3'- -CGUUGCUAAGccGGUUGAGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 58882 0.67 0.963936
Target:  5'- cGCAGCGuua-GGCgAA--CGUACGCCg -3'
miRNA:   3'- -CGUUGCuaagCCGgUUgaGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 31806 0.67 0.963936
Target:  5'- cGCAGCGAUgcggCGGCCcaauGC-CGCguuacACGUa -3'
miRNA:   3'- -CGUUGCUAa---GCCGGu---UGaGCG-----UGCGg -5'
22904 3' -52.6 NC_005137.2 + 100132 0.67 0.963593
Target:  5'- uGCGGCGcauuggcGUUCGGUCG---UGCACGCUu -3'
miRNA:   3'- -CGUUGC-------UAAGCCGGUugaGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 99624 0.67 0.963249
Target:  5'- cGCAACGugcaaaucaacUCGGaCgGAUUCGUGCGCUu -3'
miRNA:   3'- -CGUUGCua---------AGCC-GgUUGAGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 128669 0.67 0.960409
Target:  5'- uGC-ACGuUUaCGGCCA---UGCACGCCu -3'
miRNA:   3'- -CGuUGCuAA-GCCGGUugaGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 95577 0.67 0.956651
Target:  5'- gGCAGCGugUUGGCguuguaguuaaUGAUgggCGCGCGCCg -3'
miRNA:   3'- -CGUUGCuaAGCCG-----------GUUGa--GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 82238 0.67 0.956651
Target:  5'- uGCGGCGccgCGuCCAACgaUCGCGcCGCCu -3'
miRNA:   3'- -CGUUGCuaaGCcGGUUG--AGCGU-GCGG- -5'
22904 3' -52.6 NC_005137.2 + 65796 0.67 0.956651
Target:  5'- aCAAgGGUUCGGCCAGCcCGCuuuuauugACGg- -3'
miRNA:   3'- cGUUgCUAAGCCGGUUGaGCG--------UGCgg -5'
22904 3' -52.6 NC_005137.2 + 21438 0.67 0.956651
Target:  5'- cGUGGCGGcugUGGCCucUUUGUGCGCCu -3'
miRNA:   3'- -CGUUGCUaa-GCCGGuuGAGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 87338 0.67 0.956651
Target:  5'- cGCAGC----UGGCCAAC-CGCAUGgCg -3'
miRNA:   3'- -CGUUGcuaaGCCGGUUGaGCGUGCgG- -5'
22904 3' -52.6 NC_005137.2 + 90732 0.67 0.956651
Target:  5'- cGUGAUGAUUCacGUUAACacguUUGCGCGCCa -3'
miRNA:   3'- -CGUUGCUAAGc-CGGUUG----AGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 100021 0.67 0.956651
Target:  5'- cCAGCGGUgcgcaagcacgCGGuCCGACgcggCGCGCGgCg -3'
miRNA:   3'- cGUUGCUAa----------GCC-GGUUGa---GCGUGCgG- -5'
22904 3' -52.6 NC_005137.2 + 123710 0.67 0.956651
Target:  5'- uGCAGCGcUUCGuuauuaaaacuaGCCGugUCuaGCGCUa -3'
miRNA:   3'- -CGUUGCuAAGC------------CGGUugAGcgUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 122244 0.67 0.956651
Target:  5'- aGCAGacaaGcgUCaGCCGuCUCGC-CGCCc -3'
miRNA:   3'- -CGUUg---CuaAGcCGGUuGAGCGuGCGG- -5'
22904 3' -52.6 NC_005137.2 + 129502 0.67 0.952657
Target:  5'- aCAACGcgUCGGC--GC-CGCGCGgCg -3'
miRNA:   3'- cGUUGCuaAGCCGguUGaGCGUGCgG- -5'
22904 3' -52.6 NC_005137.2 + 12952 0.67 0.952657
Target:  5'- aGguGCGGUUugUGGCCAAgaaaugCGCACGUg -3'
miRNA:   3'- -CguUGCUAA--GCCGGUUga----GCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 42506 0.67 0.952657
Target:  5'- cCGGCGGUauagCGcGCUAaucGCUCGCcCGCCc -3'
miRNA:   3'- cGUUGCUAa---GC-CGGU---UGAGCGuGCGG- -5'
22904 3' -52.6 NC_005137.2 + 57445 0.67 0.952657
Target:  5'- cGCGuACGAaUCGGUgGACgccgCGCaacgaggccacgACGCCg -3'
miRNA:   3'- -CGU-UGCUaAGCCGgUUGa---GCG------------UGCGG- -5'
22904 3' -52.6 NC_005137.2 + 108548 0.67 0.952657
Target:  5'- aGC-GCGGUgCaGCCGACggagCGCACGUUg -3'
miRNA:   3'- -CGuUGCUAaGcCGGUUGa---GCGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.