miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22904 5' -55.9 NC_005137.2 + 25173 1.14 0.001195
Target:  5'- uGGAGCACGCGGAGGUUCUGCCGAAGCg -3'
miRNA:   3'- -CCUCGUGCGCCUCCAAGACGGCUUCG- -5'
22904 5' -55.9 NC_005137.2 + 31007 0.71 0.613376
Target:  5'- uGGAGUugGUGGcGGUUggugcgugcgCUGCUGgcGCa -3'
miRNA:   3'- -CCUCGugCGCCuCCAA----------GACGGCuuCG- -5'
22904 5' -55.9 NC_005137.2 + 78367 0.69 0.77373
Target:  5'- aGGAGguUgcuGCGGuGGUg--GCUGAGGCg -3'
miRNA:   3'- -CCUCguG---CGCCuCCAagaCGGCUUCG- -5'
22904 5' -55.9 NC_005137.2 + 111170 0.67 0.844058
Target:  5'- cGGGCG-GCGGAGGcuUUgUGUCGcGGCg -3'
miRNA:   3'- cCUCGUgCGCCUCC--AAgACGGCuUCG- -5'
22904 5' -55.9 NC_005137.2 + 13021 0.66 0.902096
Target:  5'- cGGGUugGUGGcGGGUgagCUGCUGuuGUu -3'
miRNA:   3'- cCUCGugCGCC-UCCAa--GACGGCuuCG- -5'
22904 5' -55.9 NC_005137.2 + 70275 0.66 0.908335
Target:  5'- aGGuGUugGCGGAGGcgUCgGUgaAGGCg -3'
miRNA:   3'- -CCuCGugCGCCUCCa-AGaCGgcUUCG- -5'
22904 5' -55.9 NC_005137.2 + 12880 0.66 0.908335
Target:  5'- cGGGCGCGgGGcgaaacAGGUg--GCCGAacacgAGCg -3'
miRNA:   3'- cCUCGUGCgCC------UCCAagaCGGCU-----UCG- -5'
22904 5' -55.9 NC_005137.2 + 70323 0.68 0.818926
Target:  5'- aGGuGUugGCGGAGGcgUC-GgCGAAGg -3'
miRNA:   3'- -CCuCGugCGCCUCCa-AGaCgGCUUCg -5'
22904 5' -55.9 NC_005137.2 + 100050 0.68 0.810195
Target:  5'- -cGGCGCGCGGcGcGUUCagcaugcuuugUGCCGcGGCg -3'
miRNA:   3'- ccUCGUGCGCCuC-CAAG-----------ACGGCuUCG- -5'
22904 5' -55.9 NC_005137.2 + 17479 0.73 0.502834
Target:  5'- uGGGGCugGUGGuGGUgCaGCCGuuGCa -3'
miRNA:   3'- -CCUCGugCGCCuCCAaGaCGGCuuCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.