miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22905 3' -60.5 NC_005137.2 + 31738 0.66 0.704965
Target:  5'- ---aGGCACCGUCACCGUUaaacuguGCCcguGGc -3'
miRNA:   3'- cgcaCCGUGGCAGUGGCGG-------UGGu--CCa -5'
22905 3' -60.5 NC_005137.2 + 130257 0.66 0.696128
Target:  5'- aCGUGcCGCCGcCACCGCCGCUu--- -3'
miRNA:   3'- cGCACcGUGGCaGUGGCGGUGGucca -5'
22905 3' -60.5 NC_005137.2 + 34588 0.66 0.686261
Target:  5'- cGCGgcgGGCG-CGUCGCCGCg--CGGGUa -3'
miRNA:   3'- -CGCa--CCGUgGCAGUGGCGgugGUCCA- -5'
22905 3' -60.5 NC_005137.2 + 83627 0.66 0.686261
Target:  5'- ---aGGCGCUGaUUGCCGCCACCGa-- -3'
miRNA:   3'- cgcaCCGUGGC-AGUGGCGGUGGUcca -5'
22905 3' -60.5 NC_005137.2 + 118197 0.66 0.656434
Target:  5'- cCGuUGGCGCUGUgGgaCGCCACCcGGUc -3'
miRNA:   3'- cGC-ACCGUGGCAgUg-GCGGUGGuCCA- -5'
22905 3' -60.5 NC_005137.2 + 103124 0.67 0.636443
Target:  5'- cCGUGGCGCCGcCACgCGaUCGCCAa-- -3'
miRNA:   3'- cGCACCGUGGCaGUG-GC-GGUGGUcca -5'
22905 3' -60.5 NC_005137.2 + 22847 0.68 0.553973
Target:  5'- gGCG-GGCgcgcgcauaccgacGCCGcCGCCGCCcgacgACCGGGa -3'
miRNA:   3'- -CGCaCCG--------------UGGCaGUGGCGG-----UGGUCCa -5'
22905 3' -60.5 NC_005137.2 + 129721 0.68 0.537403
Target:  5'- uUGUGGCGCCuUCACCuCCACCGc-- -3'
miRNA:   3'- cGCACCGUGGcAGUGGcGGUGGUcca -5'
22905 3' -60.5 NC_005137.2 + 18547 0.69 0.489769
Target:  5'- ---cGGCGCCGUCGCCcauccuGCCGCCGcGUc -3'
miRNA:   3'- cgcaCCGUGGCAGUGG------CGGUGGUcCA- -5'
22905 3' -60.5 NC_005137.2 + 117051 0.7 0.444199
Target:  5'- ----cGCACaCGUCGCUGCCGCUAGGc -3'
miRNA:   3'- cgcacCGUG-GCAGUGGCGGUGGUCCa -5'
22905 3' -60.5 NC_005137.2 + 65740 0.7 0.435371
Target:  5'- --aUGGuCACCGUCGCCGCCgggcucgcuguACCAGa- -3'
miRNA:   3'- cgcACC-GUGGCAGUGGCGG-----------UGGUCca -5'
22905 3' -60.5 NC_005137.2 + 127610 0.75 0.234269
Target:  5'- aCGUGGUACCGUCGCgCGUCACgcacaacaCAGGg -3'
miRNA:   3'- cGCACCGUGGCAGUG-GCGGUG--------GUCCa -5'
22905 3' -60.5 NC_005137.2 + 22381 1.08 0.001098
Target:  5'- cGCGUGGCACCGUCACCGCCACCAGGUu -3'
miRNA:   3'- -CGCACCGUGGCAGUGGCGGUGGUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.