miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22905 5' -53.3 NC_005137.2 + 96474 0.66 0.952004
Target:  5'- -gACCGCGaac--GCaACACGGuGCGCGu -3'
miRNA:   3'- cgUGGUGCauuuuCG-UGUGCC-CGCGC- -5'
22905 5' -53.3 NC_005137.2 + 106435 0.66 0.952004
Target:  5'- uCACgGCGUAAAAcGCGCACaGuaGCGCa -3'
miRNA:   3'- cGUGgUGCAUUUU-CGUGUGcC--CGCGc -5'
22905 5' -53.3 NC_005137.2 + 35036 0.66 0.947728
Target:  5'- -gACCACGUAGAuguGCGCGCGuacGGCu-- -3'
miRNA:   3'- cgUGGUGCAUUUu--CGUGUGC---CCGcgc -5'
22905 5' -53.3 NC_005137.2 + 130053 0.66 0.947728
Target:  5'- -aGCCGCGccuuauuGCGCcgaugACGGGCGCu -3'
miRNA:   3'- cgUGGUGCauuuu--CGUG-----UGCCCGCGc -5'
22905 5' -53.3 NC_005137.2 + 30941 0.66 0.947287
Target:  5'- cGCGCCGCGgcacAAAGCaugcugaACGCGccGCGCGc -3'
miRNA:   3'- -CGUGGUGCau--UUUCG-------UGUGCc-CGCGC- -5'
22905 5' -53.3 NC_005137.2 + 58704 0.66 0.946843
Target:  5'- gGCGCCGCGUuggcgucaauuAGGCACACGuGCa-- -3'
miRNA:   3'- -CGUGGUGCAuu---------UUCGUGUGCcCGcgc -5'
22905 5' -53.3 NC_005137.2 + 119646 0.66 0.946398
Target:  5'- gGCGCCGUGUAcuuguuguaaacaaAAAGUucucgaaacagGCACGGcGCGCGc -3'
miRNA:   3'- -CGUGGUGCAU--------------UUUCG-----------UGUGCC-CGCGC- -5'
22905 5' -53.3 NC_005137.2 + 37454 0.66 0.946398
Target:  5'- cGCACCACGUAuuuGCGCucgaucCGgucaaaguuggacuGGCGUGa -3'
miRNA:   3'- -CGUGGUGCAUuuuCGUGu-----GC--------------CCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 34573 0.67 0.943208
Target:  5'- --cCCGCGcAAAcGCAacgcgGCGGGCGCGu -3'
miRNA:   3'- cguGGUGCaUUUuCGUg----UGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 99800 0.67 0.93844
Target:  5'- cGCgACCGCugGUAcaAGGGCgACGCGGGC-CGg -3'
miRNA:   3'- -CG-UGGUG--CAU--UUUCG-UGUGCCCGcGC- -5'
22905 5' -53.3 NC_005137.2 + 20403 0.67 0.933936
Target:  5'- uCACCACGgacaccaacuggucGucGCACAggaUGGGCGCGc -3'
miRNA:   3'- cGUGGUGCau------------UuuCGUGU---GCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 60002 0.67 0.928156
Target:  5'- gGCGCCGCGaauuAGGC-CGCGGucGUGCa -3'
miRNA:   3'- -CGUGGUGCauu-UUCGuGUGCC--CGCGc -5'
22905 5' -53.3 NC_005137.2 + 93673 0.67 0.922637
Target:  5'- -gGCCGCGUAGAuGCGCAacaGGcccaGCGCc -3'
miRNA:   3'- cgUGGUGCAUUUuCGUGUg--CC----CGCGc -5'
22905 5' -53.3 NC_005137.2 + 95478 0.67 0.922637
Target:  5'- cGUACCG-GUcgGAuGCgcgccGCACGGGCGCa -3'
miRNA:   3'- -CGUGGUgCAuuUU-CG-----UGUGCCCGCGc -5'
22905 5' -53.3 NC_005137.2 + 25160 0.67 0.922072
Target:  5'- aCGCCucCGUGucuGGAGCACGCGGagguucugccgaaGCGUGg -3'
miRNA:   3'- cGUGGu-GCAU---UUUCGUGUGCC-------------CGCGC- -5'
22905 5' -53.3 NC_005137.2 + 109795 0.68 0.916868
Target:  5'- cGC-CCACGUAaaaacucugcGAAGCAucCACGuGCGCa -3'
miRNA:   3'- -CGuGGUGCAU----------UUUCGU--GUGCcCGCGc -5'
22905 5' -53.3 NC_005137.2 + 60975 0.68 0.916278
Target:  5'- cGCACCACGUAcgcGGUGCcgugggauugccgGCGGGUGa- -3'
miRNA:   3'- -CGUGGUGCAUuu-UCGUG-------------UGCCCGCgc -5'
22905 5' -53.3 NC_005137.2 + 36000 0.68 0.910849
Target:  5'- aGCGuuCCGCGUuaacacggacgAAAuuuauGUgaACACGGGCGCGg -3'
miRNA:   3'- -CGU--GGUGCA-----------UUUu----CG--UGUGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 98005 0.68 0.910234
Target:  5'- uGCGCCcgccaaguggccaGCGU----GCACGuCGGGCGCu -3'
miRNA:   3'- -CGUGG-------------UGCAuuuuCGUGU-GCCCGCGc -5'
22905 5' -53.3 NC_005137.2 + 100055 0.68 0.904582
Target:  5'- cGCGgCGCGUuc-AGCAUgcuuugugccGCGGcGCGCGg -3'
miRNA:   3'- -CGUgGUGCAuuuUCGUG----------UGCC-CGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.