miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22906 5' -54.4 NC_005137.2 + 121542 0.66 0.933423
Target:  5'- aCCGGC-GCGaAAGCACCACGUg--- -3'
miRNA:   3'- cGGUCGaCGCcUUUGUGGUGCAgaca -5'
22906 5' -54.4 NC_005137.2 + 50812 0.66 0.933423
Target:  5'- uGgCGGCUGCGGAAAUGCUGCa----- -3'
miRNA:   3'- -CgGUCGACGCCUUUGUGGUGcagaca -5'
22906 5' -54.4 NC_005137.2 + 31637 0.66 0.928156
Target:  5'- gGUCAGUgcacgcgcGCGGAcGCgACCACG-CUGUg -3'
miRNA:   3'- -CGGUCGa-------CGCCUuUG-UGGUGCaGACA- -5'
22906 5' -54.4 NC_005137.2 + 118256 0.66 0.928156
Target:  5'- aUCGGCaacGCGGAcggAGCGCUaaucgaaugGCGUCUGUa -3'
miRNA:   3'- cGGUCGa--CGCCU---UUGUGG---------UGCAGACA- -5'
22906 5' -54.4 NC_005137.2 + 35535 0.67 0.891314
Target:  5'- gGCCGGCcGUGGGcAACACgGCGcUUGUc -3'
miRNA:   3'- -CGGUCGaCGCCU-UUGUGgUGCaGACA- -5'
22906 5' -54.4 NC_005137.2 + 110486 0.68 0.861949
Target:  5'- cGCCAGCUGUuucAACuACCACGUgUGc -3'
miRNA:   3'- -CGGUCGACGccuUUG-UGGUGCAgACa -5'
22906 5' -54.4 NC_005137.2 + 89541 0.68 0.837624
Target:  5'- cGUCcGCUGCGGAcagcgcguGCGCCAUGUUUa- -3'
miRNA:   3'- -CGGuCGACGCCUu-------UGUGGUGCAGAca -5'
22906 5' -54.4 NC_005137.2 + 115299 0.69 0.802486
Target:  5'- aCgAGCUGCGGGcgauuGCGCCGCGguugaacgCUGa -3'
miRNA:   3'- cGgUCGACGCCUu----UGUGGUGCa-------GACa -5'
22906 5' -54.4 NC_005137.2 + 29519 0.69 0.787674
Target:  5'- cGCCAGUuuuUGUGGguGCGCCGCGacaacaacccggagCUGUa -3'
miRNA:   3'- -CGGUCG---ACGCCuuUGUGGUGCa-------------GACA- -5'
22906 5' -54.4 NC_005137.2 + 22417 0.7 0.764763
Target:  5'- cGCCugacGCUGCGG-AGCGUCACGUCg-- -3'
miRNA:   3'- -CGGu---CGACGCCuUUGUGGUGCAGaca -5'
22906 5' -54.4 NC_005137.2 + 20602 1.1 0.002891
Target:  5'- uGCCAGCUGCGGAAACACCACGUCUGUa -3'
miRNA:   3'- -CGGUCGACGCCUUUGUGGUGCAGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.