miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22907 3' -56.9 NC_005137.2 + 80238 0.66 0.874161
Target:  5'- uGCGCGguugcguuugaugacGGCgCGAACGCCGU-GGCGg- -3'
miRNA:   3'- cCGUGU---------------UCG-GUUUGCGGCAgCCGCgc -5'
22907 3' -56.9 NC_005137.2 + 18571 0.66 0.871247
Target:  5'- cGCGucCAacGGCCGAcuccaACGCCGUacuugcacaaUGGCGCGc -3'
miRNA:   3'- cCGU--GU--UCGGUU-----UGCGGCA----------GCCGCGC- -5'
22907 3' -56.9 NC_005137.2 + 1653 0.66 0.871247
Target:  5'- cGGCACGuuugGGCUcg--GUCGguuUCGGCGCGg -3'
miRNA:   3'- -CCGUGU----UCGGuuugCGGC---AGCCGCGC- -5'
22907 3' -56.9 NC_005137.2 + 33327 0.66 0.871247
Target:  5'- uGGCgagGCAAGCCAu-UGCCuauUUGGUGCa -3'
miRNA:   3'- -CCG---UGUUCGGUuuGCGGc--AGCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 111474 0.66 0.868298
Target:  5'- gGGCACAGaacgccuucguuuGCCuGGCGCCGUuuccguugaagaagUGGaCGCa -3'
miRNA:   3'- -CCGUGUU-------------CGGuUUGCGGCA--------------GCC-GCGc -5'
22907 3' -56.9 NC_005137.2 + 97230 0.66 0.863812
Target:  5'- uGGCAC-AGCacAACGCCG-CcGCGCa -3'
miRNA:   3'- -CCGUGuUCGguUUGCGGCaGcCGCGc -5'
22907 3' -56.9 NC_005137.2 + 99987 0.66 0.863812
Target:  5'- aGCAUcAGCCcGACGUag-CGGCGCc -3'
miRNA:   3'- cCGUGuUCGGuUUGCGgcaGCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 130037 0.66 0.861541
Target:  5'- uGGCgauGCAAGCUAAagccgcgccuuauuGCGCCGaugacgGGCGCu -3'
miRNA:   3'- -CCG---UGUUCGGUU--------------UGCGGCag----CCGCGc -5'
22907 3' -56.9 NC_005137.2 + 95503 0.66 0.85617
Target:  5'- gGGCGCAucgcugacguGGCCGGuggcgacuuGCGCUG-CGuGUGCGa -3'
miRNA:   3'- -CCGUGU----------UCGGUU---------UGCGGCaGC-CGCGC- -5'
22907 3' -56.9 NC_005137.2 + 94256 0.66 0.85617
Target:  5'- cGC-CAAGagucaCCAAACGCCGauguugugugUGGCGCGc -3'
miRNA:   3'- cCGuGUUC-----GGUUUGCGGCa---------GCCGCGC- -5'
22907 3' -56.9 NC_005137.2 + 22412 0.66 0.85617
Target:  5'- uGGCGCGccugacgcuGCgGAGCGUcaCGUCGGCGa- -3'
miRNA:   3'- -CCGUGUu--------CGgUUUGCG--GCAGCCGCgc -5'
22907 3' -56.9 NC_005137.2 + 75586 0.66 0.85617
Target:  5'- cGGaCGCGGGC--GGCGCCGU--GCGCGu -3'
miRNA:   3'- -CC-GUGUUCGguUUGCGGCAgcCGCGC- -5'
22907 3' -56.9 NC_005137.2 + 22320 0.66 0.85617
Target:  5'- aGCGCAaaAGCCAcaAACGCgGcucccUCGGCgGCa -3'
miRNA:   3'- cCGUGU--UCGGU--UUGCGgC-----AGCCG-CGc -5'
22907 3' -56.9 NC_005137.2 + 97231 0.66 0.855395
Target:  5'- cGCGCAgcaugcucucAGCCGGuuuguccacaaacAUGUCGUUGGCGUa -3'
miRNA:   3'- cCGUGU----------UCGGUU-------------UGCGGCAGCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 14097 0.66 0.851488
Target:  5'- aGGUACAAGCgAAACgggugacgGCCGUUGucaagucgcggggcaGCGCa -3'
miRNA:   3'- -CCGUGUUCGgUUUG--------CGGCAGC---------------CGCGc -5'
22907 3' -56.9 NC_005137.2 + 88023 0.66 0.848326
Target:  5'- cGGCGC-GGCCAc-CGCCGa-GGCGgGc -3'
miRNA:   3'- -CCGUGuUCGGUuuGCGGCagCCGCgC- -5'
22907 3' -56.9 NC_005137.2 + 110629 0.66 0.848326
Target:  5'- cGGC-CGuGCaCAAacGCGCCGaCGGCGUu -3'
miRNA:   3'- -CCGuGUuCG-GUU--UGCGGCaGCCGCGc -5'
22907 3' -56.9 NC_005137.2 + 75010 0.66 0.848326
Target:  5'- uGUAauCGAGCgGggUGCCGUCGGC-Ca -3'
miRNA:   3'- cCGU--GUUCGgUuuGCGGCAGCCGcGc -5'
22907 3' -56.9 NC_005137.2 + 28050 0.66 0.843526
Target:  5'- uGGCGCGAcgcgcgcugggaugcGCCAGACgGCUGUacacgcaGCGCGg -3'
miRNA:   3'- -CCGUGUU---------------CGGUUUG-CGGCAgc-----CGCGC- -5'
22907 3' -56.9 NC_005137.2 + 95606 0.66 0.841099
Target:  5'- gGGCGCGcGCCGAuuccaaauGCGUCGcgucauuguccacagCGGCGCc -3'
miRNA:   3'- -CCGUGUuCGGUU--------UGCGGCa--------------GCCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.